miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 85220 0.72 0.390239
Target:  5'- aGcGGUCGcCACCuccUGCUGCUGCUCUCg -3'
miRNA:   3'- gC-CCAGC-GUGGu--GCGGCGACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 31773 0.71 0.446718
Target:  5'- gGGGUCGCGCCA-GUCGCcGCaCUCg -3'
miRNA:   3'- gCCCAGCGUGGUgCGGCGaCGgGAGg -5'
14387 3' -62.8 NC_003521.1 + 83768 0.71 0.463675
Target:  5'- aGGGUggcgGCGCCcccCGCCGC-GCuCCUCCg -3'
miRNA:   3'- gCCCAg---CGUGGu--GCGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 109033 0.71 0.480962
Target:  5'- aGGGUaC-CACCACGuuGUUGCCagcgUCCa -3'
miRNA:   3'- gCCCA-GcGUGGUGCggCGACGGg---AGG- -5'
14387 3' -62.8 NC_003521.1 + 173733 0.71 0.455154
Target:  5'- uGGGUgCGCuuGCCAgaggcagGCUGCUGCuCCUCCu -3'
miRNA:   3'- gCCCA-GCG--UGGUg------CGGCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 360 0.71 0.480962
Target:  5'- cCGGaGgcgGCGCCuGCGaCCGCUGCCCgCCu -3'
miRNA:   3'- -GCC-Cag-CGUGG-UGC-GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 129791 0.71 0.472278
Target:  5'- aGGGUCGC-CUgggGCGCUGaaGCCgUCCa -3'
miRNA:   3'- gCCCAGCGuGG---UGCGGCgaCGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 126986 0.71 0.480962
Target:  5'- -cGGcCGCcCCGCuGCCGCUGCCCg-- -3'
miRNA:   3'- gcCCaGCGuGGUG-CGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 166227 0.71 0.463675
Target:  5'- gCGaGG-CGCGCCggccgcgggACGCCGCgccGCCgCUCCg -3'
miRNA:   3'- -GC-CCaGCGUGG---------UGCGGCGa--CGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 18175 0.71 0.430112
Target:  5'- gCGuGGaggCGCugCGCGCCuGCcgGCCCUUCg -3'
miRNA:   3'- -GC-CCa--GCGugGUGCGG-CGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 148486 0.71 0.450082
Target:  5'- gCGGGUCGUuaaAuacuacuauggaggcCCAUGCCGCggcUGCgCCUCCu -3'
miRNA:   3'- -GCCCAGCG---U---------------GGUGCGGCG---ACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 166792 0.71 0.446718
Target:  5'- gGGGUCGgACgAUGCCGCcGCCgCUgCu -3'
miRNA:   3'- gCCCAGCgUGgUGCGGCGaCGG-GAgG- -5'
14387 3' -62.8 NC_003521.1 + 55454 0.71 0.43837
Target:  5'- uGGGcggCGCGCUggaagaggcacuGCGCCGCcuUGCCgUCCu -3'
miRNA:   3'- gCCCa--GCGUGG------------UGCGGCG--ACGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 238012 0.71 0.43837
Target:  5'- uGGGUCGCcagucuucgucAUCGCGUCGUaggGCCCgUCCu -3'
miRNA:   3'- gCCCAGCG-----------UGGUGCGGCGa--CGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 204090 0.71 0.446718
Target:  5'- uGGGccacgUGCACCuggugGCGCCaCUGCgCCUCCa -3'
miRNA:   3'- gCCCa----GCGUGG-----UGCGGcGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 135577 0.71 0.446718
Target:  5'- gGGGUCGCGCaCGCGuccuCCGaggaUGUCUUCCu -3'
miRNA:   3'- gCCCAGCGUG-GUGC----GGCg---ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 167411 0.71 0.430112
Target:  5'- uGGGg-GCGCUucgGCUGCUGUCCUCCc -3'
miRNA:   3'- gCCCagCGUGGug-CGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 206402 0.71 0.43837
Target:  5'- uGGaGUCGCACCgcgACGCCcaGCUGaUCCUCa -3'
miRNA:   3'- gCC-CAGCGUGG---UGCGG--CGAC-GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 134528 0.71 0.446718
Target:  5'- -cGGcCGcCGCCugguUGCUGUUGCCCUCCa -3'
miRNA:   3'- gcCCaGC-GUGGu---GCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 43826 0.71 0.455154
Target:  5'- cCGGGUCaGcCGCCGCcgGCCGCggGCCCgUCa -3'
miRNA:   3'- -GCCCAG-C-GUGGUG--CGGCGa-CGGG-AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.