miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 237632 0.7 0.53365
Target:  5'- uCGGGUUGCuguugcccuugucGCCACGCaGCgUGCCaUCCu -3'
miRNA:   3'- -GCCCAGCG-------------UGGUGCGgCG-ACGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 178963 0.7 0.498557
Target:  5'- gGuGGUCGUcauggacaggcGCCGCGguuCCGCggcGCCCUCCc -3'
miRNA:   3'- gC-CCAGCG-----------UGGUGC---GGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 166958 0.7 0.516433
Target:  5'- gCGGGgggaggcucucgUCGCugUgguugACGUCGUUGCCCUCg -3'
miRNA:   3'- -GCCC------------AGCGugG-----UGCGGCGACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 233077 0.7 0.516433
Target:  5'- uGGGacugcCGcCGCCucCGCCGCUcgcgccGCCCUCCc -3'
miRNA:   3'- gCCCa----GC-GUGGu-GCGGCGA------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 142186 0.7 0.507462
Target:  5'- --cGUCGaCGCCGCuaccgccgccGCCGCUcucGCCCUCCu -3'
miRNA:   3'- gccCAGC-GUGGUG----------CGGCGA---CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153483 0.7 0.516433
Target:  5'- aCGcGGaUGCccuuGCCGCGCaGCUGCgCCUCCa -3'
miRNA:   3'- -GC-CCaGCG----UGGUGCGgCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 196442 0.7 0.498557
Target:  5'- cCGGGUCG-GCCGgcUGCCGCgcgaaCCUCCg -3'
miRNA:   3'- -GCCCAGCgUGGU--GCGGCGacg--GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 151269 0.7 0.534562
Target:  5'- uCGGGUgUGCGCUACGgCGCUuacGCCgaCCg -3'
miRNA:   3'- -GCCCA-GCGUGGUGCgGCGA---CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 96905 0.7 0.534562
Target:  5'- gGGGaUGCGgCGCGCCG-UGCCCgucUCCu -3'
miRNA:   3'- gCCCaGCGUgGUGCGGCgACGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 26911 0.7 0.498557
Target:  5'- -uGGUCGCACCGCGCuccagacacgcuCGCgacucGCCUUCUc -3'
miRNA:   3'- gcCCAGCGUGGUGCG------------GCGa----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 18921 0.7 0.516433
Target:  5'- aGGGUgGCGCCGCGC-GCcgGCaaUCCg -3'
miRNA:   3'- gCCCAgCGUGGUGCGgCGa-CGggAGG- -5'
14387 3' -62.8 NC_003521.1 + 82855 0.7 0.516433
Target:  5'- gCGGcGUCGCuACCAgCGCCGUcgucGCCCagCCu -3'
miRNA:   3'- -GCC-CAGCG-UGGU-GCGGCGa---CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 84670 0.69 0.589184
Target:  5'- aGGcGUCGCAgCAgCGCCagcaGCUGCgugcacaCCUCCa -3'
miRNA:   3'- gCC-CAGCGUgGU-GCGG----CGACG-------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 155701 0.69 0.543711
Target:  5'- aGGGaggcuaCGUGCCGCccGCCGCUGCCg-CCg -3'
miRNA:   3'- gCCCa-----GCGUGGUG--CGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 144347 0.69 0.580766
Target:  5'- cCGGGUgCGCGCCuuuCGCCGCUuCUacaCCg -3'
miRNA:   3'- -GCCCA-GCGUGGu--GCGGCGAcGGga-GG- -5'
14387 3' -62.8 NC_003521.1 + 70088 0.69 0.59012
Target:  5'- gCGGGUUgccgcaggGCACCugGCCGgCgUGCCg-CCg -3'
miRNA:   3'- -GCCCAG--------CGUGGugCGGC-G-ACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 146905 0.69 0.565866
Target:  5'- gCGGuaGUCGCcgcuugccgcgaccaGCCACGCCcaUGCCCUCg -3'
miRNA:   3'- -GCC--CAGCG---------------UGGUGCGGcgACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 152341 0.69 0.59012
Target:  5'- uCGGGccCGCGCCgACGCUGCUcugggGCCggCCg -3'
miRNA:   3'- -GCCCa-GCGUGG-UGCGGCGA-----CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 55526 0.69 0.59012
Target:  5'- aCGGGUaCGCGCagcgaGCGCCGC-GCCgaCg -3'
miRNA:   3'- -GCCCA-GCGUGg----UGCGGCGaCGGgaGg -5'
14387 3' -62.8 NC_003521.1 + 164468 0.69 0.59012
Target:  5'- -cGGUCGCcgcuGCCGcCGCCGCaGCCgUCa -3'
miRNA:   3'- gcCCAGCG----UGGU-GCGGCGaCGGgAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.