miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 56630 0.69 0.55291
Target:  5'- aGaGGUccacgaagaagCGCACCACggGCCGgUGCaCCUCCc -3'
miRNA:   3'- gC-CCA-----------GCGUGGUG--CGGCgACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 187651 0.69 0.543711
Target:  5'- aCGGcGUCGCcgACCuccuCGCCGCcGUCC-CCg -3'
miRNA:   3'- -GCC-CAGCG--UGGu---GCGGCGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 53546 0.69 0.543711
Target:  5'- cCGGGUCGagguGCCGCuGUCGCgucucucuaGCUCUCCc -3'
miRNA:   3'- -GCCCAGCg---UGGUG-CGGCGa--------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 54018 0.69 0.543711
Target:  5'- -uGGUCGC-CCACGCCGUgGCgCCUg- -3'
miRNA:   3'- gcCCAGCGuGGUGCGGCGaCG-GGAgg -5'
14387 3' -62.8 NC_003521.1 + 70088 0.69 0.59012
Target:  5'- gCGGGUUgccgcaggGCACCugGCCGgCgUGCCg-CCg -3'
miRNA:   3'- -GCCCAG--------CGUGGugCGGC-G-ACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 152341 0.69 0.59012
Target:  5'- uCGGGccCGCGCCgACGCUGCUcugggGCCggCCg -3'
miRNA:   3'- -GCCCa-GCGUGG-UGCGGCGA-----CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 55526 0.69 0.59012
Target:  5'- aCGGGUaCGCGCagcgaGCGCCGC-GCCgaCg -3'
miRNA:   3'- -GCCCA-GCGUGg----UGCGGCGaCGGgaGg -5'
14387 3' -62.8 NC_003521.1 + 121880 0.69 0.59012
Target:  5'- uCGGG-CGCugGCCcugacgggACGCCGCcGCCCacgCCg -3'
miRNA:   3'- -GCCCaGCG--UGG--------UGCGGCGaCGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 213077 0.69 0.59012
Target:  5'- uCGGGaCGaCAUCGCGgCGCUcGUUCUCCu -3'
miRNA:   3'- -GCCCaGC-GUGGUGCgGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 194429 0.69 0.587311
Target:  5'- aGGGaCGCAUCugcgACGCCauccucgagagcauGCUGgCCUCCg -3'
miRNA:   3'- gCCCaGCGUGG----UGCGG--------------CGACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 90254 0.69 0.580766
Target:  5'- aGGaGcCGCGCCGcCGCCGCcGCCa-CCa -3'
miRNA:   3'- gCC-CaGCGUGGU-GCGGCGaCGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 104176 0.69 0.572373
Target:  5'- gCGGGUCGCACgGCGuuGCgguaguagacguagcGCagcgucucggCCUCCu -3'
miRNA:   3'- -GCCCAGCGUGgUGCggCGa--------------CG----------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 61713 0.69 0.55291
Target:  5'- gGaGGUCauGCACCuACGCUGCUGUCgUCg -3'
miRNA:   3'- gC-CCAG--CGUGG-UGCGGCGACGGgAGg -5'
14387 3' -62.8 NC_003521.1 + 117634 0.69 0.547385
Target:  5'- cCGGuGUCGUuccgccugcgACUGCGCCGCgagacggugcgccgGCCCUUCu -3'
miRNA:   3'- -GCC-CAGCG----------UGGUGCGGCGa-------------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 102189 0.68 0.645651
Target:  5'- gGGGUgGCgacuuucGCCgAC-CCGCUGUCCUUCu -3'
miRNA:   3'- gCCCAgCG-------UGG-UGcGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 202246 0.68 0.627742
Target:  5'- aCGGcGUCGCGCCccacaacuCGuCCGCUGCUa-CCu -3'
miRNA:   3'- -GCC-CAGCGUGGu-------GC-GGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 224297 0.68 0.645651
Target:  5'- aGGGUCcguuGCGCUccagccgagccgaGCGCCGCaGCCCgugCUc -3'
miRNA:   3'- gCCCAG----CGUGG-------------UGCGGCGaCGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 40487 0.68 0.627742
Target:  5'- cCGcGG-CGCGCCacgGCGCCGCaGCgcaucucgaacuCCUCCa -3'
miRNA:   3'- -GC-CCaGCGUGG---UGCGGCGaCG------------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 166272 0.68 0.618317
Target:  5'- aCGGGcacgCGCACgGCGCgGCUgGUCCgcguggCCu -3'
miRNA:   3'- -GCCCa---GCGUGgUGCGgCGA-CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 73725 0.68 0.637169
Target:  5'- cCGGGcCGCgACCGCuucguGCaGCUGCUCUUCu -3'
miRNA:   3'- -GCCCaGCG-UGGUG-----CGgCGACGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.