miRNA display CGI


Results 101 - 120 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 111760 0.68 0.646593
Target:  5'- aGGGUCuGCGCCA-GCUcaggGC-GCCCUCg -3'
miRNA:   3'- gCCCAG-CGUGGUgCGG----CGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 154378 0.68 0.646593
Target:  5'- --uGUCGCGuCCucgguCGCCGCUGCCg-CCa -3'
miRNA:   3'- gccCAGCGU-GGu----GCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 93917 0.68 0.608902
Target:  5'- -uGGUCGCggcaaGCgGCGacuaCCGCUGCCCgCCg -3'
miRNA:   3'- gcCCAGCG-----UGgUGC----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 154415 0.68 0.646593
Target:  5'- gCGGGcacgCGCGucccCCGCGucgaCCGCUgGCCCUUCu -3'
miRNA:   3'- -GCCCa---GCGU----GGUGC----GGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 221345 0.68 0.646593
Target:  5'- gCGGGccaccUGCACCugGCCGCgcagcgacaugGUCCcgCCg -3'
miRNA:   3'- -GCCCa----GCGUGGugCGGCGa----------CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 40487 0.68 0.627742
Target:  5'- cCGcGG-CGCGCCacgGCGCCGCaGCgcaucucgaacuCCUCCa -3'
miRNA:   3'- -GC-CCaGCGUGG---UGCGGCGaCG------------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 166272 0.68 0.618317
Target:  5'- aCGGGcacgCGCACgGCGCgGCUgGUCCgcguggCCu -3'
miRNA:   3'- -GCCCa---GCGUGgUGCGgCGA-CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 127342 0.68 0.618317
Target:  5'- -cGGUCG-GCCACGauCUGCacGCCCUCCg -3'
miRNA:   3'- gcCCAGCgUGGUGC--GGCGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 130936 0.68 0.596684
Target:  5'- uCGaGGUCGCACgCAguuacugguggcccCGCCGCcGCCCgUCa -3'
miRNA:   3'- -GC-CCAGCGUG-GU--------------GCGGCGaCGGG-AGg -5'
14387 3' -62.8 NC_003521.1 + 75696 0.68 0.599501
Target:  5'- cCGcGGUccagcccccgucCGCACCAcagcCGCCGCUGuUCCUCa -3'
miRNA:   3'- -GC-CCA------------GCGUGGU----GCGGCGAC-GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 22353 0.68 0.608902
Target:  5'- cCGGGgccacugCGC-CCACGgCGUggugccggccaUGUCCUCCg -3'
miRNA:   3'- -GCCCa------GCGuGGUGCgGCG-----------ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 191146 0.68 0.599501
Target:  5'- aCGGcGacaGCGCCGCGCuCGCccgGCCCcucUCCa -3'
miRNA:   3'- -GCC-Cag-CGUGGUGCG-GCGa--CGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 85682 0.68 0.608902
Target:  5'- cCGGcGUCcaGCA-CGCGCCGCagGUUCUCCa -3'
miRNA:   3'- -GCC-CAG--CGUgGUGCGGCGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 194559 0.68 0.608902
Target:  5'- uCGGG-CGCcucgucgaaauaGCUugGgCCGCUGCCCaUCg -3'
miRNA:   3'- -GCCCaGCG------------UGGugC-GGCGACGGG-AGg -5'
14387 3' -62.8 NC_003521.1 + 74635 0.68 0.599501
Target:  5'- gCGGGguggugCGCgggACCcuggaGCGCCGCUcgGCCCUgCg -3'
miRNA:   3'- -GCCCa-----GCG---UGG-----UGCGGCGA--CGGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 223028 0.68 0.608902
Target:  5'- -cGGUCGCACggccagCACGCCGaC-GgCCUCCa -3'
miRNA:   3'- gcCCAGCGUG------GUGCGGC-GaCgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 57387 0.68 0.618317
Target:  5'- aGGGcgucgaucUCGCGCCacaGCGCCGUgcggucGCCCaCCg -3'
miRNA:   3'- gCCC--------AGCGUGG---UGCGGCGa-----CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 94327 0.68 0.599501
Target:  5'- gCGGGUCG-GCCgagggauaaucgACGUCGUcGUCCUCCu -3'
miRNA:   3'- -GCCCAGCgUGG------------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153044 0.68 0.599501
Target:  5'- aCGGGccUCaGCACCugGCC-CUGgCCUgCg -3'
miRNA:   3'- -GCCC--AG-CGUGGugCGGcGACgGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 166637 0.68 0.599501
Target:  5'- uCGGGccgCGCGCCggGCGCCGCgGCgCagcggCCa -3'
miRNA:   3'- -GCCCa--GCGUGG--UGCGGCGaCGgGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.