miRNA display CGI


Results 121 - 140 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 47996 0.68 0.646593
Target:  5'- aCGGa-CGCGCCGCcgggcuucugcgGCUGCUGCCagcgaUCCg -3'
miRNA:   3'- -GCCcaGCGUGGUG------------CGGCGACGGg----AGG- -5'
14387 3' -62.8 NC_003521.1 + 94327 0.68 0.599501
Target:  5'- gCGGGUCG-GCCgagggauaaucgACGUCGUcGUCCUCCu -3'
miRNA:   3'- -GCCCAGCgUGG------------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 104757 0.68 0.637169
Target:  5'- gCGuGGagaugagCGCGCa--GCCGCUGCCCaggUCCa -3'
miRNA:   3'- -GC-CCa------GCGUGgugCGGCGACGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 103516 0.68 0.635284
Target:  5'- gGGGUCGCcgcgcagcaGCCGCGCCacccgcaGCUccaggucgcugggGCCC-CCg -3'
miRNA:   3'- gCCCAGCG---------UGGUGCGG-------CGA-------------CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 140961 0.68 0.627742
Target:  5'- -cGGUgGcCGCCauGCGCCaGCUGCUCUUCa -3'
miRNA:   3'- gcCCAgC-GUGG--UGCGG-CGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 177664 0.68 0.646593
Target:  5'- uGGGgcggCGCGucgaucgucagcCCGCGCaGCUGCUgCUCCa -3'
miRNA:   3'- gCCCa---GCGU------------GGUGCGgCGACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 126837 0.68 0.627742
Target:  5'- aGGGUUGCagccggugcccgGCCG-GCCGcCUGCCgUCUg -3'
miRNA:   3'- gCCCAGCG------------UGGUgCGGC-GACGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 55883 0.68 0.627742
Target:  5'- uGGGaCGCuACCAUGCgcgguCGCcGaCCCUCCg -3'
miRNA:   3'- gCCCaGCG-UGGUGCG-----GCGaC-GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 2018 0.68 0.627742
Target:  5'- aCGGcGUCGCGCCccacaacuCGuCCGCUGCUa-CCu -3'
miRNA:   3'- -GCC-CAGCGUGGu-------GC-GGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 45405 0.68 0.627742
Target:  5'- uGGGUUuuCACCAgguaGCCGgUGCCCgCCg -3'
miRNA:   3'- gCCCAGc-GUGGUg---CGGCgACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 19451 0.68 0.627742
Target:  5'- gGGGgaggCGCggcgggACCAUGUCGCUGCgCggCCa -3'
miRNA:   3'- gCCCa---GCG------UGGUGCGGCGACGgGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 11844 0.68 0.618317
Target:  5'- -cGGUCcuGCGCCGC-CCGC-GCaCCUCCu -3'
miRNA:   3'- gcCCAG--CGUGGUGcGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153044 0.68 0.599501
Target:  5'- aCGGGccUCaGCACCugGCC-CUGgCCUgCg -3'
miRNA:   3'- -GCCC--AG-CGUGGugCGGcGACgGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 166637 0.68 0.599501
Target:  5'- uCGGGccgCGCGCCggGCGCCGCgGCgCagcggCCa -3'
miRNA:   3'- -GCCCa--GCGUGG--UGCGGCGaCGgGa----GG- -5'
14387 3' -62.8 NC_003521.1 + 22353 0.68 0.608902
Target:  5'- cCGGGgccacugCGC-CCACGgCGUggugccggccaUGUCCUCCg -3'
miRNA:   3'- -GCCCa------GCGuGGUGCgGCG-----------ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 93917 0.68 0.608902
Target:  5'- -uGGUCGCggcaaGCgGCGacuaCCGCUGCCCgCCg -3'
miRNA:   3'- gcCCAGCG-----UGgUGC----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 127886 0.68 0.608902
Target:  5'- gCGGGUCGCGgUagGCGuaguaguugcCCGUgacgggGCCCUCCc -3'
miRNA:   3'- -GCCCAGCGUgG--UGC----------GGCGa-----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 235289 0.68 0.615491
Target:  5'- gGcGGcCGCGCCGgcugccgucaccguCGCUGCUGCUaCUCCu -3'
miRNA:   3'- gC-CCaGCGUGGU--------------GCGGCGACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 25162 0.68 0.618317
Target:  5'- -uGGUCGCGCUuuCGCUGCU-CCCgCCg -3'
miRNA:   3'- gcCCAGCGUGGu-GCGGCGAcGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 130936 0.68 0.596684
Target:  5'- uCGaGGUCGCACgCAguuacugguggcccCGCCGCcGCCCgUCa -3'
miRNA:   3'- -GC-CCAGCGUG-GU--------------GCGGCGaCGGG-AGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.