miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 138046 0.69 0.55291
Target:  5'- cCGGcGcCGuCAUCGCgcaGCCGCUGCCgCUCUa -3'
miRNA:   3'- -GCC-CaGC-GUGGUG---CGGCGACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 143695 0.69 0.562156
Target:  5'- gCGuGcGUCGacaGCUACGCCGC-GCCUUCUg -3'
miRNA:   3'- -GC-C-CAGCg--UGGUGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 146905 0.69 0.565866
Target:  5'- gCGGuaGUCGCcgcuugccgcgaccaGCCACGCCcaUGCCCUCg -3'
miRNA:   3'- -GCC--CAGCG---------------UGGUGCGGcgACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 104176 0.69 0.572373
Target:  5'- gCGGGUCGCACgGCGuuGCgguaguagacguagcGCagcgucucggCCUCCu -3'
miRNA:   3'- -GCCCAGCGUGgUGCggCGa--------------CG----------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 144347 0.69 0.580766
Target:  5'- cCGGGUgCGCGCCuuuCGCCGCUuCUacaCCg -3'
miRNA:   3'- -GCCCA-GCGUGGu--GCGGCGAcGGga-GG- -5'
14387 3' -62.8 NC_003521.1 + 90254 0.69 0.580766
Target:  5'- aGGaGcCGCGCCGcCGCCGCcGCCa-CCa -3'
miRNA:   3'- gCC-CaGCGUGGU-GCGGCGaCGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 194429 0.69 0.587311
Target:  5'- aGGGaCGCAUCugcgACGCCauccucgagagcauGCUGgCCUCCg -3'
miRNA:   3'- gCCCaGCGUGG----UGCGG--------------CGACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 84670 0.69 0.589184
Target:  5'- aGGcGUCGCAgCAgCGCCagcaGCUGCgugcacaCCUCCa -3'
miRNA:   3'- gCC-CAGCGUgGU-GCGG----CGACG-------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 164468 0.69 0.59012
Target:  5'- -cGGUCGCcgcuGCCGcCGCCGCaGCCgUCa -3'
miRNA:   3'- gcCCAGCG----UGGU-GCGGCGaCGGgAGg -5'
14387 3' -62.8 NC_003521.1 + 55526 0.69 0.59012
Target:  5'- aCGGGUaCGCGCagcgaGCGCCGC-GCCgaCg -3'
miRNA:   3'- -GCCCA-GCGUGg----UGCGGCGaCGGgaGg -5'
14387 3' -62.8 NC_003521.1 + 152341 0.69 0.59012
Target:  5'- uCGGGccCGCGCCgACGCUGCUcugggGCCggCCg -3'
miRNA:   3'- -GCCCa-GCGUGG-UGCGGCGA-----CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 70088 0.69 0.59012
Target:  5'- gCGGGUUgccgcaggGCACCugGCCGgCgUGCCg-CCg -3'
miRNA:   3'- -GCCCAG--------CGUGGugCGGC-G-ACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 121880 0.69 0.59012
Target:  5'- uCGGG-CGCugGCCcugacgggACGCCGCcGCCCacgCCg -3'
miRNA:   3'- -GCCCaGCG--UGG--------UGCGGCGaCGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 213077 0.69 0.59012
Target:  5'- uCGGGaCGaCAUCGCGgCGCUcGUUCUCCu -3'
miRNA:   3'- -GCCCaGC-GUGGUGCgGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 130936 0.68 0.596684
Target:  5'- uCGaGGUCGCACgCAguuacugguggcccCGCCGCcGCCCgUCa -3'
miRNA:   3'- -GC-CCAGCGUG-GU--------------GCGGCGaCGGG-AGg -5'
14387 3' -62.8 NC_003521.1 + 94327 0.68 0.599501
Target:  5'- gCGGGUCG-GCCgagggauaaucgACGUCGUcGUCCUCCu -3'
miRNA:   3'- -GCCCAGCgUGG------------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 191146 0.68 0.599501
Target:  5'- aCGGcGacaGCGCCGCGCuCGCccgGCCCcucUCCa -3'
miRNA:   3'- -GCC-Cag-CGUGGUGCG-GCGa--CGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 75696 0.68 0.599501
Target:  5'- cCGcGGUccagcccccgucCGCACCAcagcCGCCGCUGuUCCUCa -3'
miRNA:   3'- -GC-CCA------------GCGUGGU----GCGGCGAC-GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 74635 0.68 0.599501
Target:  5'- gCGGGguggugCGCgggACCcuggaGCGCCGCUcgGCCCUgCg -3'
miRNA:   3'- -GCCCa-----GCG---UGG-----UGCGGCGA--CGGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 153044 0.68 0.599501
Target:  5'- aCGGGccUCaGCACCugGCC-CUGgCCUgCg -3'
miRNA:   3'- -GCCC--AG-CGUGGugCGGcGACgGGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.