miRNA display CGI


Results 101 - 120 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 153044 0.68 0.599501
Target:  5'- aCGGGccUCaGCACCugGCC-CUGgCCUgCg -3'
miRNA:   3'- -GCCC--AG-CGUGGugCGGcGACgGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 93917 0.68 0.608902
Target:  5'- -uGGUCGCggcaaGCgGCGacuaCCGCUGCCCgCCg -3'
miRNA:   3'- gcCCAGCG-----UGgUGC----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 127886 0.68 0.608902
Target:  5'- gCGGGUCGCGgUagGCGuaguaguugcCCGUgacgggGCCCUCCc -3'
miRNA:   3'- -GCCCAGCGUgG--UGC----------GGCGa-----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 85682 0.68 0.608902
Target:  5'- cCGGcGUCcaGCA-CGCGCCGCagGUUCUCCa -3'
miRNA:   3'- -GCC-CAG--CGUgGUGCGGCGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 22353 0.68 0.608902
Target:  5'- cCGGGgccacugCGC-CCACGgCGUggugccggccaUGUCCUCCg -3'
miRNA:   3'- -GCCCa------GCGuGGUGCgGCG-----------ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 194559 0.68 0.608902
Target:  5'- uCGGG-CGCcucgucgaaauaGCUugGgCCGCUGCCCaUCg -3'
miRNA:   3'- -GCCCaGCG------------UGGugC-GGCGACGGG-AGg -5'
14387 3' -62.8 NC_003521.1 + 223028 0.68 0.608902
Target:  5'- -cGGUCGCACggccagCACGCCGaC-GgCCUCCa -3'
miRNA:   3'- gcCCAGCGUG------GUGCGGC-GaCgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 235289 0.68 0.615491
Target:  5'- gGcGGcCGCGCCGgcugccgucaccguCGCUGCUGCUaCUCCu -3'
miRNA:   3'- gC-CCaGCGUGGU--------------GCGGCGACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 57387 0.68 0.618317
Target:  5'- aGGGcgucgaucUCGCGCCacaGCGCCGUgcggucGCCCaCCg -3'
miRNA:   3'- gCCC--------AGCGUGG---UGCGGCGa-----CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 127342 0.68 0.618317
Target:  5'- -cGGUCG-GCCACGauCUGCacGCCCUCCg -3'
miRNA:   3'- gcCCAGCgUGGUGC--GGCGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 166272 0.68 0.618317
Target:  5'- aCGGGcacgCGCACgGCGCgGCUgGUCCgcguggCCu -3'
miRNA:   3'- -GCCCa---GCGUGgUGCGgCGA-CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 25162 0.68 0.618317
Target:  5'- -uGGUCGCGCUuuCGCUGCU-CCCgCCg -3'
miRNA:   3'- gcCCAGCGUGGu-GCGGCGAcGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 11844 0.68 0.618317
Target:  5'- -cGGUCcuGCGCCGC-CCGC-GCaCCUCCu -3'
miRNA:   3'- gcCCAG--CGUGGUGcGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 40487 0.68 0.627742
Target:  5'- cCGcGG-CGCGCCacgGCGCCGCaGCgcaucucgaacuCCUCCa -3'
miRNA:   3'- -GC-CCaGCGUGG---UGCGGCGaCG------------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 55883 0.68 0.627742
Target:  5'- uGGGaCGCuACCAUGCgcgguCGCcGaCCCUCCg -3'
miRNA:   3'- gCCCaGCG-UGGUGCG-----GCGaC-GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 126837 0.68 0.627742
Target:  5'- aGGGUUGCagccggugcccgGCCG-GCCGcCUGCCgUCUg -3'
miRNA:   3'- gCCCAGCG------------UGGUgCGGC-GACGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 2018 0.68 0.627742
Target:  5'- aCGGcGUCGCGCCccacaacuCGuCCGCUGCUa-CCu -3'
miRNA:   3'- -GCC-CAGCGUGGu-------GC-GGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 19451 0.68 0.627742
Target:  5'- gGGGgaggCGCggcgggACCAUGUCGCUGCgCggCCa -3'
miRNA:   3'- gCCCa---GCG------UGGUGCGGCGACGgGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 45405 0.68 0.627742
Target:  5'- uGGGUUuuCACCAgguaGCCGgUGCCCgCCg -3'
miRNA:   3'- gCCCAGc-GUGGUg---CGGCgACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 202246 0.68 0.627742
Target:  5'- aCGGcGUCGCGCCccacaacuCGuCCGCUGCUa-CCu -3'
miRNA:   3'- -GCC-CAGCGUGGu-------GC-GGCGACGGgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.