miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 142334 0.66 0.727446
Target:  5'- uGGGUgCGCgaggccgccGCCACgGCCGCcGCggccgccgccgccuCCUCCa -3'
miRNA:   3'- gCCCA-GCG---------UGGUG-CGGCGaCG--------------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 176750 0.66 0.727446
Target:  5'- cCGGGcUCGCACagacccagcaccguCAgGUCGUUGagcaCCUCCa -3'
miRNA:   3'- -GCCC-AGCGUG--------------GUgCGGCGACg---GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 239751 0.66 0.72472
Target:  5'- gGGGUCGCGCgGCGagaGCUGgcgcaggucgguggcCCCgacgCCg -3'
miRNA:   3'- gCCCAGCGUGgUGCgg-CGAC---------------GGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 39524 0.66 0.72472
Target:  5'- gGGGUCGCGCgGCGagaGCUGgcgcaggucgguggcCCCgacgCCg -3'
miRNA:   3'- gCCCAGCGUGgUGCgg-CGAC---------------GGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 187623 0.66 0.721074
Target:  5'- cCGGGcgagcCGgGCCgcGCGCCGCUGgCCaUCUu -3'
miRNA:   3'- -GCCCa----GCgUGG--UGCGGCGACgGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 141220 0.66 0.721074
Target:  5'- cCGGG-CGCugCaggucaccaacGCGCCGCaGUUCUUCg -3'
miRNA:   3'- -GCCCaGCGugG-----------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 138788 0.66 0.721074
Target:  5'- cCGGccgUGCugCGCGCCGUgGCCCa-- -3'
miRNA:   3'- -GCCca-GCGugGUGCGGCGaCGGGagg -5'
14387 3' -62.8 NC_003521.1 + 167051 0.66 0.721074
Target:  5'- gCGGcGUgGCGCUcaugACGCCGgUGCCggCCc -3'
miRNA:   3'- -GCC-CAgCGUGG----UGCGGCgACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 129964 0.66 0.721074
Target:  5'- gCGGGcCGCugCucuacgugcacCGUCGCUGCCgCUgCg -3'
miRNA:   3'- -GCCCaGCGugGu----------GCGGCGACGG-GAgG- -5'
14387 3' -62.8 NC_003521.1 + 104692 0.66 0.721074
Target:  5'- gGGGcCGUggGCgGCGUCGacgUGCCCUCg -3'
miRNA:   3'- gCCCaGCG--UGgUGCGGCg--ACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 54521 0.66 0.721074
Target:  5'- aGGaUCuGCACgGCGCCGCUgggGCCCg-- -3'
miRNA:   3'- gCCcAG-CGUGgUGCGGCGA---CGGGagg -5'
14387 3' -62.8 NC_003521.1 + 15688 0.66 0.721074
Target:  5'- uGGGUcCGCaACCACGUCgaccagguGCUGUCgCUCg -3'
miRNA:   3'- gCCCA-GCG-UGGUGCGG--------CGACGG-GAGg -5'
14387 3' -62.8 NC_003521.1 + 181209 0.66 0.721074
Target:  5'- cCGcGGUCGcCGCCgGgGCCGCcGCCaCUaCCg -3'
miRNA:   3'- -GC-CCAGC-GUGG-UgCGGCGaCGG-GA-GG- -5'
14387 3' -62.8 NC_003521.1 + 129565 0.67 0.715587
Target:  5'- gCGGGcccgacgauggcugcUC-CGCCGCGCCGC-GCCggCCg -3'
miRNA:   3'- -GCCC---------------AGcGUGGUGCGGCGaCGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 94723 0.67 0.711916
Target:  5'- cCGGGUC-CugCGCGUCGUUGCUg--- -3'
miRNA:   3'- -GCCCAGcGugGUGCGGCGACGGgagg -5'
14387 3' -62.8 NC_003521.1 + 87318 0.67 0.711916
Target:  5'- uGGGUgCGguCCACGCuggCGCUgaccagacgGCCCgagCCg -3'
miRNA:   3'- gCCCA-GCguGGUGCG---GCGA---------CGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 142472 0.67 0.711916
Target:  5'- uCGGGUCGaaACCGCGUCGUcucUGCCagcgcaaCCa -3'
miRNA:   3'- -GCCCAGCg-UGGUGCGGCG---ACGGga-----GG- -5'
14387 3' -62.8 NC_003521.1 + 13917 0.67 0.711916
Target:  5'- gGGGcCGCggagGCCGCgcugGCCGCcguggUGCCC-CCg -3'
miRNA:   3'- gCCCaGCG----UGGUG----CGGCG-----ACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 225060 0.67 0.711916
Target:  5'- -uGGUCGCguagcucgGgCAUGCUGCUGCCCg-- -3'
miRNA:   3'- gcCCAGCG--------UgGUGCGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 142554 0.67 0.711916
Target:  5'- aCGGcuuGUCGCccGCCAgGCuCGCcgUGCCCgCCg -3'
miRNA:   3'- -GCC---CAGCG--UGGUgCG-GCG--ACGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.