miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 57387 0.68 0.618317
Target:  5'- aGGGcgucgaucUCGCGCCacaGCGCCGUgcggucGCCCaCCg -3'
miRNA:   3'- gCCC--------AGCGUGG---UGCGGCGa-----CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 59708 0.66 0.769224
Target:  5'- uCGGGUCGCcUgguggcgcaauucgaCACGCCGgauCUGgCCUUCg -3'
miRNA:   3'- -GCCCAGCGuG---------------GUGCGGC---GACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 60717 1.1 0.001198
Target:  5'- gCGGGUCGCACCACGCCGCUGCCCUCCc -3'
miRNA:   3'- -GCCCAGCGUGGUGCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 61713 0.69 0.55291
Target:  5'- gGaGGUCauGCACCuACGCUGCUGUCgUCg -3'
miRNA:   3'- gC-CCAG--CGUGG-UGCGGCGACGGgAGg -5'
14387 3' -62.8 NC_003521.1 + 63088 0.67 0.656007
Target:  5'- ----cUGCGCCggcGCGCUGCccGCCCUCCa -3'
miRNA:   3'- gcccaGCGUGG---UGCGGCGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 65769 0.67 0.693435
Target:  5'- aCGGGcCGCAUCACaCCGCcGCCggacaaCUUCg -3'
miRNA:   3'- -GCCCaGCGUGGUGcGGCGaCGG------GAGG- -5'
14387 3' -62.8 NC_003521.1 + 68360 0.66 0.739188
Target:  5'- -cGG-CGCACCGCuGCCGgccCUGCCUcCCc -3'
miRNA:   3'- gcCCaGCGUGGUG-CGGC---GACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 70088 0.69 0.59012
Target:  5'- gCGGGUUgccgcaggGCACCugGCCGgCgUGCCg-CCg -3'
miRNA:   3'- -GCCCAG--------CGUGGugCGGC-G-ACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 72255 0.67 0.656007
Target:  5'- uGGGUCaGcCGCCACcuuacCCGCaGCCCgCCa -3'
miRNA:   3'- gCCCAG-C-GUGGUGc----GGCGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 73725 0.68 0.637169
Target:  5'- cCGGGcCGCgACCGCuucguGCaGCUGCUCUUCu -3'
miRNA:   3'- -GCCCaGCG-UGGUG-----CGgCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 73774 0.84 0.069822
Target:  5'- cCGGcGUCaugaGCGCCACGCCGCUGCCCgagCUg -3'
miRNA:   3'- -GCC-CAG----CGUGGUGCGGCGACGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 74145 0.67 0.684126
Target:  5'- aCGuGG-CGCGCCACggggcccagguGCCGCUGgCCgacugcgCCg -3'
miRNA:   3'- -GC-CCaGCGUGGUG-----------CGGCGACgGGa------GG- -5'
14387 3' -62.8 NC_003521.1 + 74635 0.68 0.599501
Target:  5'- gCGGGguggugCGCgggACCcuggaGCGCCGCUcgGCCCUgCg -3'
miRNA:   3'- -GCCCa-----GCG---UGG-----UGCGGCGA--CGGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 75050 0.67 0.683193
Target:  5'- gCGGGcuggccuUCgGCACgAugaugggcaagcCGCCGCcGCCCUCCc -3'
miRNA:   3'- -GCCC-------AG-CGUGgU------------GCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 75548 0.66 0.730167
Target:  5'- aGcGG-CGCcggcggcgGCUACGCCaGC-GCCCUCCu -3'
miRNA:   3'- gC-CCaGCG--------UGGUGCGG-CGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 75696 0.68 0.599501
Target:  5'- cCGcGGUccagcccccgucCGCACCAcagcCGCCGCUGuUCCUCa -3'
miRNA:   3'- -GC-CCA------------GCGUGGU----GCGGCGAC-GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 82855 0.7 0.516433
Target:  5'- gCGGcGUCGCuACCAgCGCCGUcgucGCCCagCCu -3'
miRNA:   3'- -GCC-CAGCG-UGGU-GCGGCGa---CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 83768 0.71 0.463675
Target:  5'- aGGGUggcgGCGCCcccCGCCGC-GCuCCUCCg -3'
miRNA:   3'- gCCCAg---CGUGGu--GCGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 84670 0.69 0.589184
Target:  5'- aGGcGUCGCAgCAgCGCCagcaGCUGCgugcacaCCUCCa -3'
miRNA:   3'- gCC-CAGCGUgGU-GCGG----CGACG-------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 85220 0.72 0.390239
Target:  5'- aGcGGUCGcCACCuccUGCUGCUGCUCUCg -3'
miRNA:   3'- gC-CCAGC-GUGGu--GCGGCGACGGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.