miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 85560 0.73 0.352862
Target:  5'- aCGGGcCugagGCGCCGcCGCCGCcGCCCcCCa -3'
miRNA:   3'- -GCCCaG----CGUGGU-GCGGCGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 85682 0.68 0.608902
Target:  5'- cCGGcGUCcaGCA-CGCGCCGCagGUUCUCCa -3'
miRNA:   3'- -GCC-CAG--CGUgGUGCGGCGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 86045 0.73 0.374981
Target:  5'- uGaGGUucCGCuCCACGCCGUUGCCCgagaaguagCCg -3'
miRNA:   3'- gC-CCA--GCGuGGUGCGGCGACGGGa--------GG- -5'
14387 3' -62.8 NC_003521.1 + 87318 0.67 0.711916
Target:  5'- uGGGUgCGguCCACGCuggCGCUgaccagacgGCCCgagCCg -3'
miRNA:   3'- gCCCA-GCguGGUGCG---GCGA---------CGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 88000 0.67 0.665405
Target:  5'- uGGGggCGCGCgACGCCgaGCUGUaccaCCUgCCg -3'
miRNA:   3'- gCCCa-GCGUGgUGCGG--CGACG----GGA-GG- -5'
14387 3' -62.8 NC_003521.1 + 88726 0.72 0.411471
Target:  5'- aCGGGUCuccucgcagagccgGCGCaCGuCGCCGUgGUCCUCCg -3'
miRNA:   3'- -GCCCAG--------------CGUG-GU-GCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 90254 0.69 0.580766
Target:  5'- aGGaGcCGCGCCGcCGCCGCcGCCa-CCa -3'
miRNA:   3'- gCC-CaGCGUGGU-GCGGCGaCGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 90840 0.76 0.224367
Target:  5'- gCGGGUgCGCGCCGCccguGCUGCUGCUgaCCa -3'
miRNA:   3'- -GCCCA-GCGUGGUG----CGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 91059 0.73 0.352862
Target:  5'- uGaGG-CGUACCGCGCgGCcGCCCUCg -3'
miRNA:   3'- gC-CCaGCGUGGUGCGgCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 91837 0.76 0.245351
Target:  5'- aCGGGcgugaaggugCGCGCCAgcacgcggaugaUGgCGCUGCCCUCCa -3'
miRNA:   3'- -GCCCa---------GCGUGGU------------GCgGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 92179 0.68 0.646593
Target:  5'- gGGGUCgGgGCgAUGCC-CUGgCCUCCc -3'
miRNA:   3'- gCCCAG-CgUGgUGCGGcGACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 93917 0.68 0.608902
Target:  5'- -uGGUCGCggcaaGCgGCGacuaCCGCUGCCCgCCg -3'
miRNA:   3'- gcCCAGCG-----UGgUGC----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 94327 0.68 0.599501
Target:  5'- gCGGGUCG-GCCgagggauaaucgACGUCGUcGUCCUCCu -3'
miRNA:   3'- -GCCCAGCgUGG------------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 94723 0.67 0.711916
Target:  5'- cCGGGUC-CugCGCGUCGUUGCUg--- -3'
miRNA:   3'- -GCCCAGcGugGUGCGGCGACGGgagg -5'
14387 3' -62.8 NC_003521.1 + 95659 0.67 0.702701
Target:  5'- aCGGaGUUGCGCgaCugGCCGC-GCgaCUCCu -3'
miRNA:   3'- -GCC-CAGCGUG--GugCGGCGaCGg-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 96905 0.7 0.534562
Target:  5'- gGGGaUGCGgCGCGCCG-UGCCCgucUCCu -3'
miRNA:   3'- gCCCaGCGUgGUGCGGCgACGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 99364 0.67 0.702701
Target:  5'- gCGGcuUCGCACCAC-CUGCaGCaCCUCUc -3'
miRNA:   3'- -GCCc-AGCGUGGUGcGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 101912 0.67 0.674781
Target:  5'- aGGGcaggCGCACCGagcgGCCGUggugguagaUGCCCgugUCCa -3'
miRNA:   3'- gCCCa---GCGUGGUg---CGGCG---------ACGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 102189 0.68 0.645651
Target:  5'- gGGGUgGCgacuuucGCCgAC-CCGCUGUCCUUCu -3'
miRNA:   3'- gCCCAgCG-------UGG-UGcGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 103222 0.66 0.765748
Target:  5'- uGaGGUCGCcgGCCAgGCgGCgGCCCa-- -3'
miRNA:   3'- gC-CCAGCG--UGGUgCGgCGaCGGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.