miRNA display CGI


Results 101 - 120 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 103342 0.66 0.756986
Target:  5'- gCGGcGcCGCGaCACGCCgGC-GCCCUuCCa -3'
miRNA:   3'- -GCC-CaGCGUgGUGCGG-CGaCGGGA-GG- -5'
14387 3' -62.8 NC_003521.1 + 103516 0.68 0.635284
Target:  5'- gGGGUCGCcgcgcagcaGCCGCGCCacccgcaGCUccaggucgcugggGCCC-CCg -3'
miRNA:   3'- gCCCAGCG---------UGGUGCGG-------CGA-------------CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 103572 0.72 0.390239
Target:  5'- -aGGUCGC-CCGCGCagaaGCUGCgcacguacuCCUCCa -3'
miRNA:   3'- gcCCAGCGuGGUGCGg---CGACG---------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 104176 0.69 0.572373
Target:  5'- gCGGGUCGCACgGCGuuGCgguaguagacguagcGCagcgucucggCCUCCu -3'
miRNA:   3'- -GCCCAGCGUGgUGCggCGa--------------CG----------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 104692 0.66 0.721074
Target:  5'- gGGGcCGUggGCgGCGUCGacgUGCCCUCg -3'
miRNA:   3'- gCCCaGCG--UGgUGCGGCg--ACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 104757 0.68 0.637169
Target:  5'- gCGuGGagaugagCGCGCa--GCCGCUGCCCaggUCCa -3'
miRNA:   3'- -GC-CCa------GCGUGgugCGGCGACGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 105003 0.76 0.23889
Target:  5'- aCGGGagcguucgucgcCGCGCCucccucCGCCGCUGCuCCUCCu -3'
miRNA:   3'- -GCCCa-----------GCGUGGu-----GCGGCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 105313 0.66 0.74813
Target:  5'- uGGGgacgcCGCGCgACGUCGCcGCUUUCg -3'
miRNA:   3'- gCCCa----GCGUGgUGCGGCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 105823 0.66 0.74813
Target:  5'- aGGG-CGaCGCCACGgC-CUGCCC-CUg -3'
miRNA:   3'- gCCCaGC-GUGGUGCgGcGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 108452 0.67 0.674781
Target:  5'- gCGGGUgUGCGgCGUGCCGCUGauaCCCUgCa -3'
miRNA:   3'- -GCCCA-GCGUgGUGCGGCGAC---GGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 109033 0.71 0.480962
Target:  5'- aGGGUaC-CACCACGuuGUUGCCagcgUCCa -3'
miRNA:   3'- gCCCA-GcGUGGUGCggCGACGGg---AGG- -5'
14387 3' -62.8 NC_003521.1 + 109507 0.75 0.262137
Target:  5'- aGuGGUCGCGCCG-GCCGCUGCUCg-- -3'
miRNA:   3'- gC-CCAGCGUGGUgCGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 109699 0.74 0.331682
Target:  5'- gGGGUCGCGCUgucccuucccgGCaGCCGCgccGCCCcgCCg -3'
miRNA:   3'- gCCCAGCGUGG-----------UG-CGGCGa--CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 109758 0.68 0.637169
Target:  5'- cCGcGGUCGCcgccACCGCGuCCGagGCCCgCCg -3'
miRNA:   3'- -GC-CCAGCG----UGGUGC-GGCgaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 110524 0.66 0.74813
Target:  5'- -uGGaUGCGCgGCGCCGCgGCCUcgCCc -3'
miRNA:   3'- gcCCaGCGUGgUGCGGCGaCGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 111760 0.68 0.646593
Target:  5'- aGGGUCuGCGCCA-GCUcaggGC-GCCCUCg -3'
miRNA:   3'- gCCCAG-CGUGGUgCGG----CGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 111867 0.66 0.730167
Target:  5'- -----aGCGCCACGCCGCcagcCCCUCg -3'
miRNA:   3'- gcccagCGUGGUGCGGCGac--GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 112340 0.75 0.292173
Target:  5'- cCGGcG-CGCACagccuCACGCCGCUGCCCauggacgugaUCCg -3'
miRNA:   3'- -GCC-CaGCGUG-----GUGCGGCGACGGG----------AGG- -5'
14387 3' -62.8 NC_003521.1 + 114830 0.67 0.702701
Target:  5'- uGGGcacgCGCACCGUGCUcauGCUGCgCCUUa -3'
miRNA:   3'- gCCCa---GCGUGGUGCGG---CGACG-GGAGg -5'
14387 3' -62.8 NC_003521.1 + 115943 0.66 0.756986
Target:  5'- aGGGcgaCGCGCUGUGCCuGCUGCCg-CCg -3'
miRNA:   3'- gCCCa--GCGUGGUGCGG-CGACGGgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.