miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 197132 0.72 0.425201
Target:  5'- gGGGUCGUugucgucgucuccuCC-UGCUGCUGCuCCUCCu -3'
miRNA:   3'- gCCCAGCGu-------------GGuGCGGCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 196442 0.7 0.498557
Target:  5'- cCGGGUCG-GCCGgcUGCCGCgcgaaCCUCCg -3'
miRNA:   3'- -GCCCAGCgUGGU--GCGGCGacg--GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 194559 0.68 0.608902
Target:  5'- uCGGG-CGCcucgucgaaauaGCUugGgCCGCUGCCCaUCg -3'
miRNA:   3'- -GCCCaGCG------------UGGugC-GGCGACGGG-AGg -5'
14387 3' -62.8 NC_003521.1 + 194429 0.69 0.587311
Target:  5'- aGGGaCGCAUCugcgACGCCauccucgagagcauGCUGgCCUCCg -3'
miRNA:   3'- gCCCaGCGUGG----UGCGG--------------CGACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 191146 0.68 0.599501
Target:  5'- aCGGcGacaGCGCCGCGCuCGCccgGCCCcucUCCa -3'
miRNA:   3'- -GCC-Cag-CGUGGUGCG-GCGa--CGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 190846 0.67 0.684126
Target:  5'- cCGGcucccUCGaccCACC-CGCCGCUcGUCCUCCu -3'
miRNA:   3'- -GCCc----AGC---GUGGuGCGGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 187651 0.69 0.543711
Target:  5'- aCGGcGUCGCcgACCuccuCGCCGCcGUCC-CCg -3'
miRNA:   3'- -GCC-CAGCG--UGGu---GCGGCGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 187623 0.66 0.721074
Target:  5'- cCGGGcgagcCGgGCCgcGCGCCGCUGgCCaUCUu -3'
miRNA:   3'- -GCCCa----GCgUGG--UGCGGCGACgGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 185072 0.67 0.702701
Target:  5'- -cGGcCGCGCC-UGUCGCUGCCgC-CCg -3'
miRNA:   3'- gcCCaGCGUGGuGCGGCGACGG-GaGG- -5'
14387 3' -62.8 NC_003521.1 + 183563 0.66 0.765748
Target:  5'- uGGGUCGCuucuacaucaagGCCAacugGCCGCgcgagaGCCgCUCg -3'
miRNA:   3'- gCCCAGCG------------UGGUg---CGGCGa-----CGG-GAGg -5'
14387 3' -62.8 NC_003521.1 + 182778 0.67 0.684126
Target:  5'- uCGGGUgGcCGCCagcagcaacACGCgCGC-GCCCUCg -3'
miRNA:   3'- -GCCCAgC-GUGG---------UGCG-GCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 181816 0.67 0.692506
Target:  5'- gGGGUCGUcuccguaGCCuuCGUCGUccCCCUCCu -3'
miRNA:   3'- gCCCAGCG-------UGGu-GCGGCGacGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 181209 0.66 0.721074
Target:  5'- cCGcGGUCGcCGCCgGgGCCGCcGCCaCUaCCg -3'
miRNA:   3'- -GC-CCAGC-GUGG-UgCGGCGaCGG-GA-GG- -5'
14387 3' -62.8 NC_003521.1 + 179317 0.73 0.374981
Target:  5'- uGGuUCGCGCgCACGUCGUucgggUGCCCUCUu -3'
miRNA:   3'- gCCcAGCGUG-GUGCGGCG-----ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 178963 0.7 0.498557
Target:  5'- gGuGGUCGUcauggacaggcGCCGCGguuCCGCggcGCCCUCCc -3'
miRNA:   3'- gC-CCAGCG-----------UGGUGC---GGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 177664 0.68 0.646593
Target:  5'- uGGGgcggCGCGucgaucgucagcCCGCGCaGCUGCUgCUCCa -3'
miRNA:   3'- gCCCa---GCGU------------GGUGCGgCGACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 176750 0.66 0.727446
Target:  5'- cCGGGcUCGCACagacccagcaccguCAgGUCGUUGagcaCCUCCa -3'
miRNA:   3'- -GCCC-AGCGUG--------------GUgCGGCGACg---GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 175114 0.8 0.125307
Target:  5'- aGGGcCGcCGCgGCGCCGCUGUCCUUCu -3'
miRNA:   3'- gCCCaGC-GUGgUGCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 174531 0.66 0.756986
Target:  5'- cCGGGUCGgcugugccCGCCAguCCGCcuCCCUCCu -3'
miRNA:   3'- -GCCCAGC--------GUGGUgcGGCGacGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 174455 0.68 0.644709
Target:  5'- uGGuGUCGCugCuCGCCGCcgGCCacgcgagcgggaUCCa -3'
miRNA:   3'- gCC-CAGCGugGuGCGGCGa-CGGg-----------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.