miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 174217 0.66 0.763129
Target:  5'- gGGGUCGCGCgggucgggcaggggCGCGUCGgaGCUCa-- -3'
miRNA:   3'- gCCCAGCGUG--------------GUGCGGCgaCGGGagg -5'
14387 3' -62.8 NC_003521.1 + 173733 0.71 0.455154
Target:  5'- uGGGUgCGCuuGCCAgaggcagGCUGCUGCuCCUCCu -3'
miRNA:   3'- gCCCA-GCG--UGGUg------CGGCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 173535 0.68 0.637169
Target:  5'- uCGGG-CGUcaGgCGCaGCgGCUGUCCUCCc -3'
miRNA:   3'- -GCCCaGCG--UgGUG-CGgCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 168272 0.67 0.656007
Target:  5'- aGaGGUCGCgagacgacgacACCGuCGCCGCcGC-CUCCg -3'
miRNA:   3'- gC-CCAGCG-----------UGGU-GCGGCGaCGgGAGG- -5'
14387 3' -62.8 NC_003521.1 + 168076 0.66 0.765748
Target:  5'- gGaGGUagagcgcgGCACCACcgGUCGgaUGCCCUCCa -3'
miRNA:   3'- gC-CCAg-------CGUGGUG--CGGCg-ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 167667 0.78 0.19088
Target:  5'- -aGGUCGCaggccgaggcggcGCCGcCGCCGCUGCCC-CCg -3'
miRNA:   3'- gcCCAGCG-------------UGGU-GCGGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 167572 0.66 0.739188
Target:  5'- aCGGcGcUCGuCGUCACGCCGCUGCUgUUg -3'
miRNA:   3'- -GCC-C-AGC-GUGGUGCGGCGACGGgAGg -5'
14387 3' -62.8 NC_003521.1 + 167411 0.71 0.430112
Target:  5'- uGGGg-GCGCUucgGCUGCUGUCCUCCc -3'
miRNA:   3'- gCCCagCGUGGug-CGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 167108 0.75 0.25644
Target:  5'- aGcGGUCGCGgcCCGgGUCGCUGCgCUCCa -3'
miRNA:   3'- gC-CCAGCGU--GGUgCGGCGACGgGAGG- -5'
14387 3' -62.8 NC_003521.1 + 167051 0.66 0.721074
Target:  5'- gCGGcGUgGCGCUcaugACGCCGgUGCCggCCc -3'
miRNA:   3'- -GCC-CAgCGUGG----UGCGGCgACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 166958 0.7 0.516433
Target:  5'- gCGGGgggaggcucucgUCGCugUgguugACGUCGUUGCCCUCg -3'
miRNA:   3'- -GCCC------------AGCGugG-----UGCGGCGACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 166792 0.71 0.446718
Target:  5'- gGGGUCGgACgAUGCCGCcGCCgCUgCu -3'
miRNA:   3'- gCCCAGCgUGgUGCGGCGaCGG-GAgG- -5'
14387 3' -62.8 NC_003521.1 + 166637 0.68 0.599501
Target:  5'- uCGGGccgCGCGCCggGCGCCGCgGCgCagcggCCa -3'
miRNA:   3'- -GCCCa--GCGUGG--UGCGGCGaCGgGa----GG- -5'
14387 3' -62.8 NC_003521.1 + 166272 0.68 0.618317
Target:  5'- aCGGGcacgCGCACgGCGCgGCUgGUCCgcguggCCu -3'
miRNA:   3'- -GCCCa---GCGUGgUGCGgCGA-CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 166227 0.71 0.463675
Target:  5'- gCGaGG-CGCGCCggccgcgggACGCCGCgccGCCgCUCCg -3'
miRNA:   3'- -GC-CCaGCGUGG---------UGCGGCGa--CGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 166192 0.66 0.739188
Target:  5'- aGGGUcccgCGCACCACcCCGCUGUUg--- -3'
miRNA:   3'- gCCCA----GCGUGGUGcGGCGACGGgagg -5'
14387 3' -62.8 NC_003521.1 + 165998 0.66 0.756986
Target:  5'- gCGGGacgccgUCGCGCUcgGCGCCGU--CCgUCCg -3'
miRNA:   3'- -GCCC------AGCGUGG--UGCGGCGacGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 165894 0.66 0.74813
Target:  5'- gCGGGUa-CACCACcCCGCgcugccggGCCgaCUCCa -3'
miRNA:   3'- -GCCCAgcGUGGUGcGGCGa-------CGG--GAGG- -5'
14387 3' -62.8 NC_003521.1 + 164468 0.69 0.59012
Target:  5'- -cGGUCGCcgcuGCCGcCGCCGCaGCCgUCa -3'
miRNA:   3'- gcCCAGCG----UGGU-GCGGCGaCGGgAGg -5'
14387 3' -62.8 NC_003521.1 + 163103 0.66 0.765748
Target:  5'- uCGGGcgccaGCGCCACGaccaCCGCcG-CCUCCu -3'
miRNA:   3'- -GCCCag---CGUGGUGC----GGCGaCgGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.