miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 162992 0.67 0.656007
Target:  5'- aCGGGUgGCcCCAacgagaGCgCGCUGCUCaCCa -3'
miRNA:   3'- -GCCCAgCGuGGUg-----CG-GCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 162301 0.66 0.739188
Target:  5'- cCGGGagucCGCGgaauCCGCGUCGCguguccggucgGCCCgUCCg -3'
miRNA:   3'- -GCCCa---GCGU----GGUGCGGCGa----------CGGG-AGG- -5'
14387 3' -62.8 NC_003521.1 + 162208 0.67 0.656007
Target:  5'- uGGGgCGaGCCGCGCaguCGgUGCCuCUCCg -3'
miRNA:   3'- gCCCaGCgUGGUGCG---GCgACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 160295 0.67 0.674781
Target:  5'- --cGUCGUACUcguCGUCGCUGCCgcCUCCc -3'
miRNA:   3'- gccCAGCGUGGu--GCGGCGACGG--GAGG- -5'
14387 3' -62.8 NC_003521.1 + 157990 0.68 0.637169
Target:  5'- uGGGcaccuccaccUGUGCCGC-CCGgUGCCCUCCu -3'
miRNA:   3'- gCCCa---------GCGUGGUGcGGCgACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 155701 0.69 0.543711
Target:  5'- aGGGaggcuaCGUGCCGCccGCCGCUGCCg-CCg -3'
miRNA:   3'- gCCCa-----GCGUGGUG--CGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 154415 0.68 0.646593
Target:  5'- gCGGGcacgCGCGucccCCGCGucgaCCGCUgGCCCUUCu -3'
miRNA:   3'- -GCCCa---GCGU----GGUGC----GGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 154378 0.68 0.646593
Target:  5'- --uGUCGCGuCCucgguCGCCGCUGCCg-CCa -3'
miRNA:   3'- gccCAGCGU-GGu----GCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 154014 0.66 0.733785
Target:  5'- aCGGGUCGCGCagCACcuggugcaugcucuuGCCGCggcaggcGCCCauaaagCCg -3'
miRNA:   3'- -GCCCAGCGUG--GUG---------------CGGCGa------CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 153721 0.67 0.703625
Target:  5'- uGGG-CGCcacgcaggccuucaACCuggaccucaaccccuACGCCGCcGCCUUCCa -3'
miRNA:   3'- gCCCaGCG--------------UGG---------------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153483 0.7 0.516433
Target:  5'- aCGcGGaUGCccuuGCCGCGCaGCUGCgCCUCCa -3'
miRNA:   3'- -GC-CCaGCG----UGGUGCGgCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153438 0.66 0.74813
Target:  5'- -cGG-CGuCACCucCGCCGCcucGUCCUCCa -3'
miRNA:   3'- gcCCaGC-GUGGu-GCGGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153044 0.68 0.599501
Target:  5'- aCGGGccUCaGCACCugGCC-CUGgCCUgCg -3'
miRNA:   3'- -GCCC--AG-CGUGGugCGGcGACgGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 152341 0.69 0.59012
Target:  5'- uCGGGccCGCGCCgACGCUGCUcugggGCCggCCg -3'
miRNA:   3'- -GCCCa-GCGUGG-UGCGGCGA-----CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 151269 0.7 0.534562
Target:  5'- uCGGGUgUGCGCUACGgCGCUuacGCCgaCCg -3'
miRNA:   3'- -GCCCA-GCGUGGUGCgGCGA---CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 150562 0.66 0.764876
Target:  5'- gCGGGUgGUggcggcgGCgGCGgCGCgGCuCCUCCu -3'
miRNA:   3'- -GCCCAgCG-------UGgUGCgGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 148948 0.79 0.162622
Target:  5'- cCGuGGUCGCACCGcCGCCGCcGUCCuggUCCg -3'
miRNA:   3'- -GC-CCAGCGUGGU-GCGGCGaCGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 148898 0.77 0.214458
Target:  5'- cCGGGUC-CACCGCaucGCCGCcGCCgUCCu -3'
miRNA:   3'- -GCCCAGcGUGGUG---CGGCGaCGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 148820 0.67 0.693435
Target:  5'- --cGcCGCGCCuCGCCGCUcCCgCUCCg -3'
miRNA:   3'- gccCaGCGUGGuGCGGCGAcGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 148781 0.66 0.765748
Target:  5'- gGcGGUCGCGCCGaggaGCCGCgGCUg--- -3'
miRNA:   3'- gC-CCAGCGUGGUg---CGGCGaCGGgagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.