Results 41 - 60 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 124125 | 0.73 | 0.345697 |
Target: 5'- uGuGGUgauuccCGC-CCGCGCCGCUGC-CUCCg -3' miRNA: 3'- gC-CCA------GCGuGGUGCGGCGACGgGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 23906 | 0.74 | 0.30492 |
Target: 5'- gGGGUCG-ACCGCcuCCGCUgccaccgcGCCCUCCu -3' miRNA: 3'- gCCCAGCgUGGUGc-GGCGA--------CGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 109507 | 0.75 | 0.262137 |
Target: 5'- aGuGGUCGCGCCG-GCCGCUGCUCg-- -3' miRNA: 3'- gC-CCAGCGUGGUgCGGCGACGGGagg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 222017 | 0.75 | 0.261563 |
Target: 5'- gCGGGaaGCACUugGCCacgcgaaagcagcGCUgGCCCUCCa -3' miRNA: 3'- -GCCCagCGUGGugCGG-------------CGA-CGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 73774 | 0.84 | 0.069822 |
Target: 5'- cCGGcGUCaugaGCGCCACGCCGCUGCCCgagCUg -3' miRNA: 3'- -GCC-CAG----CGUGGUGCGGCGACGGGa--GG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 50283 | 0.72 | 0.405898 |
Target: 5'- cCGGGUC-CGCCGCugcuGCCGCcGCaCCUCg -3' miRNA: 3'- -GCCCAGcGUGGUG----CGGCGaCG-GGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 88726 | 0.72 | 0.411471 |
Target: 5'- aCGGGUCuccucgcagagccgGCGCaCGuCGCCGUgGUCCUCCg -3' miRNA: 3'- -GCCCAG--------------CGUG-GU-GCGGCGaCGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 83768 | 0.71 | 0.463675 |
Target: 5'- aGGGUggcgGCGCCcccCGCCGC-GCuCCUCCg -3' miRNA: 3'- gCCCAg---CGUGGu--GCGGCGaCG-GGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 43826 | 0.71 | 0.455154 |
Target: 5'- cCGGGUCaGcCGCCGCcgGCCGCggGCCCgUCa -3' miRNA: 3'- -GCCCAG-C-GUGGUG--CGGCGa-CGGG-AGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 173733 | 0.71 | 0.455154 |
Target: 5'- uGGGUgCGCuuGCCAgaggcagGCUGCUGCuCCUCCu -3' miRNA: 3'- gCCCA-GCG--UGGUg------CGGCGACG-GGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 148486 | 0.71 | 0.450082 |
Target: 5'- gCGGGUCGUuaaAuacuacuauggaggcCCAUGCCGCggcUGCgCCUCCu -3' miRNA: 3'- -GCCCAGCG---U---------------GGUGCGGCG---ACG-GGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 134528 | 0.71 | 0.446718 |
Target: 5'- -cGGcCGcCGCCugguUGCUGUUGCCCUCCa -3' miRNA: 3'- gcCCaGC-GUGGu---GCGGCGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 166792 | 0.71 | 0.446718 |
Target: 5'- gGGGUCGgACgAUGCCGCcGCCgCUgCu -3' miRNA: 3'- gCCCAGCgUGgUGCGGCGaCGG-GAgG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 135577 | 0.71 | 0.446718 |
Target: 5'- gGGGUCGCGCaCGCGuccuCCGaggaUGUCUUCCu -3' miRNA: 3'- gCCCAGCGUG-GUGC----GGCg---ACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 204090 | 0.71 | 0.446718 |
Target: 5'- uGGGccacgUGCACCuggugGCGCCaCUGCgCCUCCa -3' miRNA: 3'- gCCCa----GCGUGG-----UGCGGcGACG-GGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 31773 | 0.71 | 0.446718 |
Target: 5'- gGGGUCGCGCCA-GUCGCcGCaCUCg -3' miRNA: 3'- gCCCAGCGUGGUgCGGCGaCGgGAGg -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 55454 | 0.71 | 0.43837 |
Target: 5'- uGGGcggCGCGCUggaagaggcacuGCGCCGCcuUGCCgUCCu -3' miRNA: 3'- gCCCa--GCGUGG------------UGCGGCG--ACGGgAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 238012 | 0.71 | 0.43837 |
Target: 5'- uGGGUCGCcagucuucgucAUCGCGUCGUaggGCCCgUCCu -3' miRNA: 3'- gCCCAGCG-----------UGGUGCGGCGa--CGGG-AGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 167411 | 0.71 | 0.430112 |
Target: 5'- uGGGg-GCGCUucgGCUGCUGUCCUCCc -3' miRNA: 3'- gCCCagCGUGGug-CGGCGACGGGAGG- -5' |
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14387 | 3' | -62.8 | NC_003521.1 | + | 28758 | 0.72 | 0.413874 |
Target: 5'- gCGGGcCGCGCCAcCGCCcuagcGCUGCaCUUUCu -3' miRNA: 3'- -GCCCaGCGUGGU-GCGG-----CGACG-GGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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