Results 61 - 80 of 274 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 55454 | 0.71 | 0.43837 |
Target: 5'- uGGGcggCGCGCUggaagaggcacuGCGCCGCcuUGCCgUCCu -3' miRNA: 3'- gCCCa--GCGUGG------------UGCGGCG--ACGGgAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 31773 | 0.71 | 0.446718 |
Target: 5'- gGGGUCGCGCCA-GUCGCcGCaCUCg -3' miRNA: 3'- gCCCAGCGUGGUgCGGCGaCGgGAGg -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 196442 | 0.7 | 0.498557 |
Target: 5'- cCGGGUCG-GCCGgcUGCCGCgcgaaCCUCCg -3' miRNA: 3'- -GCCCAGCgUGGU--GCGGCGacg--GGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 142186 | 0.7 | 0.507462 |
Target: 5'- --cGUCGaCGCCGCuaccgccgccGCCGCUcucGCCCUCCu -3' miRNA: 3'- gccCAGC-GUGGUG----------CGGCGA---CGGGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 153483 | 0.7 | 0.516433 |
Target: 5'- aCGcGGaUGCccuuGCCGCGCaGCUGCgCCUCCa -3' miRNA: 3'- -GC-CCaGCG----UGGUGCGgCGACG-GGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 233077 | 0.7 | 0.516433 |
Target: 5'- uGGGacugcCGcCGCCucCGCCGCUcgcgccGCCCUCCc -3' miRNA: 3'- gCCCa----GC-GUGGu-GCGGCGA------CGGGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 155701 | 0.69 | 0.543711 |
Target: 5'- aGGGaggcuaCGUGCCGCccGCCGCUGCCg-CCg -3' miRNA: 3'- gCCCa-----GCGUGGUG--CGGCGACGGgaGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 53546 | 0.69 | 0.543711 |
Target: 5'- cCGGGUCGagguGCCGCuGUCGCgucucucuaGCUCUCCc -3' miRNA: 3'- -GCCCAGCg---UGGUG-CGGCGa--------CGGGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 187651 | 0.69 | 0.543711 |
Target: 5'- aCGGcGUCGCcgACCuccuCGCCGCcGUCC-CCg -3' miRNA: 3'- -GCC-CAGCG--UGGu---GCGGCGaCGGGaGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 56630 | 0.69 | 0.55291 |
Target: 5'- aGaGGUccacgaagaagCGCACCACggGCCGgUGCaCCUCCc -3' miRNA: 3'- gC-CCA-----------GCGUGGUG--CGGCgACG-GGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 126986 | 0.71 | 0.480962 |
Target: 5'- -cGGcCGCcCCGCuGCCGCUGCCCg-- -3' miRNA: 3'- gcCCaGCGuGGUG-CGGCGACGGGagg -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 109033 | 0.71 | 0.480962 |
Target: 5'- aGGGUaC-CACCACGuuGUUGCCagcgUCCa -3' miRNA: 3'- gCCCA-GcGUGGUGCggCGACGGg---AGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 204090 | 0.71 | 0.446718 |
Target: 5'- uGGGccacgUGCACCuggugGCGCCaCUGCgCCUCCa -3' miRNA: 3'- gCCCa----GCGUGG-----UGCGGcGACG-GGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 135577 | 0.71 | 0.446718 |
Target: 5'- gGGGUCGCGCaCGCGuccuCCGaggaUGUCUUCCu -3' miRNA: 3'- gCCCAGCGUG-GUGC----GGCg---ACGGGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 166792 | 0.71 | 0.446718 |
Target: 5'- gGGGUCGgACgAUGCCGCcGCCgCUgCu -3' miRNA: 3'- gCCCAGCgUGgUGCGGCGaCGG-GAgG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 134528 | 0.71 | 0.446718 |
Target: 5'- -cGGcCGcCGCCugguUGCUGUUGCCCUCCa -3' miRNA: 3'- gcCCaGC-GUGGu---GCGGCGACGGGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 148486 | 0.71 | 0.450082 |
Target: 5'- gCGGGUCGUuaaAuacuacuauggaggcCCAUGCCGCggcUGCgCCUCCu -3' miRNA: 3'- -GCCCAGCG---U---------------GGUGCGGCG---ACG-GGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 173733 | 0.71 | 0.455154 |
Target: 5'- uGGGUgCGCuuGCCAgaggcagGCUGCUGCuCCUCCu -3' miRNA: 3'- gCCCA-GCG--UGGUg------CGGCGACG-GGAGG- -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 43826 | 0.71 | 0.455154 |
Target: 5'- cCGGGUCaGcCGCCGCcgGCCGCggGCCCgUCa -3' miRNA: 3'- -GCCCAG-C-GUGGUG--CGGCGa-CGGG-AGg -5' |
|||||||
14387 | 3' | -62.8 | NC_003521.1 | + | 83768 | 0.71 | 0.463675 |
Target: 5'- aGGGUggcgGCGCCcccCGCCGC-GCuCCUCCg -3' miRNA: 3'- gCCCAg---CGUGGu--GCGGCGaCG-GGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home