miRNA display CGI


Results 101 - 120 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 223028 0.68 0.608902
Target:  5'- -cGGUCGCACggccagCACGCCGaC-GgCCUCCa -3'
miRNA:   3'- gcCCAGCGUG------GUGCGGC-GaCgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 57387 0.68 0.618317
Target:  5'- aGGGcgucgaucUCGCGCCacaGCGCCGUgcggucGCCCaCCg -3'
miRNA:   3'- gCCC--------AGCGUGG---UGCGGCGa-----CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 127342 0.68 0.618317
Target:  5'- -cGGUCG-GCCACGauCUGCacGCCCUCCg -3'
miRNA:   3'- gcCCAGCgUGGUGC--GGCGa-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 166272 0.68 0.618317
Target:  5'- aCGGGcacgCGCACgGCGCgGCUgGUCCgcguggCCu -3'
miRNA:   3'- -GCCCa---GCGUGgUGCGgCGA-CGGGa-----GG- -5'
14387 3' -62.8 NC_003521.1 + 40487 0.68 0.627742
Target:  5'- cCGcGG-CGCGCCacgGCGCCGCaGCgcaucucgaacuCCUCCa -3'
miRNA:   3'- -GC-CCaGCGUGG---UGCGGCGaCG------------GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 152341 0.69 0.59012
Target:  5'- uCGGGccCGCGCCgACGCUGCUcugggGCCggCCg -3'
miRNA:   3'- -GCCCa-GCGUGG-UGCGGCGA-----CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 70088 0.69 0.59012
Target:  5'- gCGGGUUgccgcaggGCACCugGCCGgCgUGCCg-CCg -3'
miRNA:   3'- -GCCCAG--------CGUGGugCGGC-G-ACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 196442 0.7 0.498557
Target:  5'- cCGGGUCG-GCCGgcUGCCGCgcgaaCCUCCg -3'
miRNA:   3'- -GCCCAGCgUGGU--GCGGCGacg--GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 142186 0.7 0.507462
Target:  5'- --cGUCGaCGCCGCuaccgccgccGCCGCUcucGCCCUCCu -3'
miRNA:   3'- gccCAGC-GUGGUG----------CGGCGA---CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 153483 0.7 0.516433
Target:  5'- aCGcGGaUGCccuuGCCGCGCaGCUGCgCCUCCa -3'
miRNA:   3'- -GC-CCaGCG----UGGUGCGgCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 233077 0.7 0.516433
Target:  5'- uGGGacugcCGcCGCCucCGCCGCUcgcgccGCCCUCCc -3'
miRNA:   3'- gCCCa----GC-GUGGu-GCGGCGA------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 155701 0.69 0.543711
Target:  5'- aGGGaggcuaCGUGCCGCccGCCGCUGCCg-CCg -3'
miRNA:   3'- gCCCa-----GCGUGGUG--CGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 53546 0.69 0.543711
Target:  5'- cCGGGUCGagguGCCGCuGUCGCgucucucuaGCUCUCCc -3'
miRNA:   3'- -GCCCAGCg---UGGUG-CGGCGa--------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 187651 0.69 0.543711
Target:  5'- aCGGcGUCGCcgACCuccuCGCCGCcGUCC-CCg -3'
miRNA:   3'- -GCC-CAGCG--UGGu---GCGGCGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 56630 0.69 0.55291
Target:  5'- aGaGGUccacgaagaagCGCACCACggGCCGgUGCaCCUCCc -3'
miRNA:   3'- gC-CCA-----------GCGUGGUG--CGGCgACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 116522 0.69 0.55291
Target:  5'- uGGGUUGCgucACCuCGCCGC-GCUUUCUg -3'
miRNA:   3'- gCCCAGCG---UGGuGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 143695 0.69 0.562156
Target:  5'- gCGuGcGUCGacaGCUACGCCGC-GCCUUCUg -3'
miRNA:   3'- -GC-C-CAGCg--UGGUGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 146905 0.69 0.565866
Target:  5'- gCGGuaGUCGCcgcuugccgcgaccaGCCACGCCcaUGCCCUCg -3'
miRNA:   3'- -GCC--CAGCG---------------UGGUGCGGcgACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 144347 0.69 0.580766
Target:  5'- cCGGGUgCGCGCCuuuCGCCGCUuCUacaCCg -3'
miRNA:   3'- -GCCCA-GCGUGGu--GCGGCGAcGGga-GG- -5'
14387 3' -62.8 NC_003521.1 + 84670 0.69 0.589184
Target:  5'- aGGcGUCGCAgCAgCGCCagcaGCUGCgugcacaCCUCCa -3'
miRNA:   3'- gCC-CAGCGUgGU-GCGG----CGACG-------GGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.