miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 166958 0.7 0.516433
Target:  5'- gCGGGgggaggcucucgUCGCugUgguugACGUCGUUGCCCUCg -3'
miRNA:   3'- -GCCC------------AGCGugG-----UGCGGCGACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 91059 0.73 0.352862
Target:  5'- uGaGG-CGUACCGCGCgGCcGCCCUCg -3'
miRNA:   3'- gC-CCaGCGUGGUGCGgCGaCGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 20320 0.78 0.166471
Target:  5'- -aGGagGcCACCACGCUGCUGCUCUCCc -3'
miRNA:   3'- gcCCagC-GUGGUGCGGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 82855 0.7 0.516433
Target:  5'- gCGGcGUCGCuACCAgCGCCGUcgucGCCCagCCu -3'
miRNA:   3'- -GCC-CAGCG-UGGU-GCGGCGa---CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 148948 0.79 0.162622
Target:  5'- cCGuGGUCGCACCGcCGCCGCcGUCCuggUCCg -3'
miRNA:   3'- -GC-CCAGCGUGGU-GCGGCGaCGGG---AGG- -5'
14387 3' -62.8 NC_003521.1 + 45405 0.68 0.627742
Target:  5'- uGGGUUuuCACCAgguaGCCGgUGCCCgCCg -3'
miRNA:   3'- gCCCAGc-GUGGUg---CGGCgACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 148898 0.77 0.214458
Target:  5'- cCGGGUC-CACCGCaucGCCGCcGCCgUCCu -3'
miRNA:   3'- -GCCCAGcGUGGUG---CGGCGaCGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 25162 0.68 0.618317
Target:  5'- -uGGUCGCGCUuuCGCUGCU-CCCgCCg -3'
miRNA:   3'- gcCCAGCGUGGu-GCGGCGAcGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 93917 0.68 0.608902
Target:  5'- -uGGUCGCggcaaGCgGCGacuaCCGCUGCCCgCCg -3'
miRNA:   3'- gcCCAGCG-----UGgUGC----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 213077 0.69 0.59012
Target:  5'- uCGGGaCGaCAUCGCGgCGCUcGUUCUCCu -3'
miRNA:   3'- -GCCCaGC-GUGGUGCgGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 90254 0.69 0.580766
Target:  5'- aGGaGcCGCGCCGcCGCCGCcGCCa-CCa -3'
miRNA:   3'- gCC-CaGCGUGGU-GCGGCGaCGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 117634 0.69 0.547385
Target:  5'- cCGGuGUCGUuccgccugcgACUGCGCCGCgagacggugcgccgGCCCUUCu -3'
miRNA:   3'- -GCC-CAGCG----------UGGUGCGGCGa-------------CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 151269 0.7 0.534562
Target:  5'- uCGGGUgUGCGCUACGgCGCUuacGCCgaCCg -3'
miRNA:   3'- -GCCCA-GCGUGGUGCgGCGA---CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 26911 0.7 0.498557
Target:  5'- -uGGUCGCACCGCGCuccagacacgcuCGCgacucGCCUUCUc -3'
miRNA:   3'- gcCCAGCGUGGUGCG------------GCGa----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 166227 0.71 0.463675
Target:  5'- gCGaGG-CGCGCCggccgcgggACGCCGCgccGCCgCUCCg -3'
miRNA:   3'- -GC-CCaGCGUGG---------UGCGGCGa--CGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 137934 0.72 0.413874
Target:  5'- uCGGG-CGUGCUGCGCCuCUGCgCCUCg -3'
miRNA:   3'- -GCCCaGCGUGGUGCGGcGACG-GGAGg -5'
14387 3' -62.8 NC_003521.1 + 139804 0.73 0.367504
Target:  5'- aCGGG-CGUGCCcgccaggacGCGCCcCUGUCCUCCc -3'
miRNA:   3'- -GCCCaGCGUGG---------UGCGGcGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 109699 0.74 0.331682
Target:  5'- gGGGUCGCGCUgucccuucccgGCaGCCGCgccGCCCcgCCg -3'
miRNA:   3'- gCCCAGCGUGG-----------UG-CGGCGa--CGGGa-GG- -5'
14387 3' -62.8 NC_003521.1 + 112340 0.75 0.292173
Target:  5'- cCGGcG-CGCACagccuCACGCCGCUGCCCauggacgugaUCCg -3'
miRNA:   3'- -GCC-CaGCGUG-----GUGCGGCGACGGG----------AGG- -5'
14387 3' -62.8 NC_003521.1 + 139674 0.76 0.239957
Target:  5'- aGGGaCGCagACCGCGCCGC-GCUUUCCg -3'
miRNA:   3'- gCCCaGCG--UGGUGCGGCGaCGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.