miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 151269 0.7 0.534562
Target:  5'- uCGGGUgUGCGCUACGgCGCUuacGCCgaCCg -3'
miRNA:   3'- -GCCCA-GCGUGGUGCgGCGA---CGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 138046 0.69 0.55291
Target:  5'- cCGGcGcCGuCAUCGCgcaGCCGCUGCCgCUCUa -3'
miRNA:   3'- -GCC-CaGC-GUGGUG---CGGCGACGG-GAGG- -5'
14387 3' -62.8 NC_003521.1 + 90840 0.76 0.224367
Target:  5'- gCGGGUgCGCGCCGCccguGCUGCUGCUgaCCa -3'
miRNA:   3'- -GCCCA-GCGUGGUG----CGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 91837 0.76 0.245351
Target:  5'- aCGGGcgugaaggugCGCGCCAgcacgcggaugaUGgCGCUGCCCUCCa -3'
miRNA:   3'- -GCCCa---------GCGUGGU------------GCgGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 208958 0.75 0.292173
Target:  5'- gCGGuaccgcUCGCACCGCGCCGCcGUCUUCUu -3'
miRNA:   3'- -GCCc-----AGCGUGGUGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 205901 0.73 0.338637
Target:  5'- aGGGUCuGCGCCGCuacCUGCUGCgCUUCg -3'
miRNA:   3'- gCCCAG-CGUGGUGc--GGCGACGgGAGG- -5'
14387 3' -62.8 NC_003521.1 + 122109 0.73 0.367504
Target:  5'- cCGGuGcCGCGCCccuCGCCcaugagcCUGCCCUCCa -3'
miRNA:   3'- -GCC-CaGCGUGGu--GCGGc------GACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 197132 0.72 0.425201
Target:  5'- gGGGUCGUugucgucgucuccuCC-UGCUGCUGCuCCUCCu -3'
miRNA:   3'- gCCCAGCGu-------------GGuGCGGCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 129791 0.71 0.472278
Target:  5'- aGGGUCGC-CUgggGCGCUGaaGCCgUCCa -3'
miRNA:   3'- gCCCAGCGuGG---UGCGGCgaCGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 178963 0.7 0.498557
Target:  5'- gGuGGUCGUcauggacaggcGCCGCGguuCCGCggcGCCCUCCc -3'
miRNA:   3'- gC-CCAGCG-----------UGGUGC---GGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 117242 0.67 0.674781
Target:  5'- aGGGcaCGCAUCACGCggCGCUGCacgaCUgCCu -3'
miRNA:   3'- gCCCa-GCGUGGUGCG--GCGACGg---GA-GG- -5'
14387 3' -62.8 NC_003521.1 + 18137 0.67 0.665405
Target:  5'- -cGGcCGCACCGaggucgaGCCGCUGCUCa-- -3'
miRNA:   3'- gcCCaGCGUGGUg------CGGCGACGGGagg -5'
14387 3' -62.8 NC_003521.1 + 121880 0.69 0.59012
Target:  5'- uCGGG-CGCugGCCcugacgggACGCCGCcGCCCacgCCg -3'
miRNA:   3'- -GCCCaGCG--UGG--------UGCGGCGaCGGGa--GG- -5'
14387 3' -62.8 NC_003521.1 + 153044 0.68 0.599501
Target:  5'- aCGGGccUCaGCACCugGCC-CUGgCCUgCg -3'
miRNA:   3'- -GCCC--AG-CGUGGugCGGcGACgGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 25162 0.68 0.618317
Target:  5'- -uGGUCGCGCUuuCGCUGCU-CCCgCCg -3'
miRNA:   3'- gcCCAGCGUGGu-GCGGCGAcGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 45405 0.68 0.627742
Target:  5'- uGGGUUuuCACCAgguaGCCGgUGCCCgCCg -3'
miRNA:   3'- gCCCAGc-GUGGUg---CGGCgACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 140961 0.68 0.627742
Target:  5'- -cGGUgGcCGCCauGCGCCaGCUGCUCUUCa -3'
miRNA:   3'- gcCCAgC-GUGG--UGCGG-CGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 17448 0.68 0.637169
Target:  5'- uCGGGgCGcCGCgAUGUCGCUGCUgaCCa -3'
miRNA:   3'- -GCCCaGC-GUGgUGCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 174455 0.68 0.644709
Target:  5'- uGGuGUCGCugCuCGCCGCcgGCCacgcgagcgggaUCCa -3'
miRNA:   3'- gCC-CAGCGugGuGCGGCGa-CGGg-----------AGG- -5'
14387 3' -62.8 NC_003521.1 + 72255 0.67 0.656007
Target:  5'- uGGGUCaGcCGCCACcuuacCCGCaGCCCgCCa -3'
miRNA:   3'- gCCCAG-C-GUGGUGc----GGCGaCGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.