miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 94327 0.68 0.599501
Target:  5'- gCGGGUCG-GCCgagggauaaucgACGUCGUcGUCCUCCu -3'
miRNA:   3'- -GCCCAGCgUGG------------UGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 127886 0.68 0.608902
Target:  5'- gCGGGUCGCGgUagGCGuaguaguugcCCGUgacgggGCCCUCCc -3'
miRNA:   3'- -GCCCAGCGUgG--UGC----------GGCGa-----CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 11844 0.68 0.618317
Target:  5'- -cGGUCcuGCGCCGC-CCGC-GCaCCUCCu -3'
miRNA:   3'- gcCCAG--CGUGGUGcGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 55883 0.68 0.627742
Target:  5'- uGGGaCGCuACCAUGCgcgguCGCcGaCCCUCCg -3'
miRNA:   3'- gCCCaGCG-UGGUGCG-----GCGaC-GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 103516 0.68 0.635284
Target:  5'- gGGGUCGCcgcgcagcaGCCGCGCCacccgcaGCUccaggucgcugggGCCC-CCg -3'
miRNA:   3'- gCCCAGCG---------UGGUGCGG-------CGA-------------CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 174455 0.68 0.644709
Target:  5'- uGGuGUCGCugCuCGCCGCcgGCCacgcgagcgggaUCCa -3'
miRNA:   3'- gCC-CAGCGugGuGCGGCGa-CGGg-----------AGG- -5'
14387 3' -62.8 NC_003521.1 + 72255 0.67 0.656007
Target:  5'- uGGGUCaGcCGCCACcuuacCCGCaGCCCgCCa -3'
miRNA:   3'- gCCCAG-C-GUGGUGc----GGCGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 178963 0.7 0.498557
Target:  5'- gGuGGUCGUcauggacaggcGCCGCGguuCCGCggcGCCCUCCc -3'
miRNA:   3'- gC-CCAGCG-----------UGGUGC---GGCGa--CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 129791 0.71 0.472278
Target:  5'- aGGGUCGC-CUgggGCGCUGaaGCCgUCCa -3'
miRNA:   3'- gCCCAGCGuGG---UGCGGCgaCGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 197132 0.72 0.425201
Target:  5'- gGGGUCGUugucgucgucuccuCC-UGCUGCUGCuCCUCCu -3'
miRNA:   3'- gCCCAGCGu-------------GGuGCGGCGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 29997 0.67 0.693435
Target:  5'- aGGGgacgaGCGCCACGgaCCGCUGUCggaacagaacugUUCCg -3'
miRNA:   3'- gCCCag---CGUGGUGC--GGCGACGG------------GAGG- -5'
14387 3' -62.8 NC_003521.1 + 99364 0.67 0.702701
Target:  5'- gCGGcuUCGCACCAC-CUGCaGCaCCUCUc -3'
miRNA:   3'- -GCCc-AGCGUGGUGcGGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 206319 0.67 0.702701
Target:  5'- cCGcGGcCGCuACCuGCGCuCGCUGCUCUgCu -3'
miRNA:   3'- -GC-CCaGCG-UGG-UGCG-GCGACGGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 15688 0.66 0.721074
Target:  5'- uGGGUcCGCaACCACGUCgaccagguGCUGUCgCUCg -3'
miRNA:   3'- gCCCA-GCG-UGGUGCGG--------CGACGG-GAGg -5'
14387 3' -62.8 NC_003521.1 + 181209 0.66 0.721074
Target:  5'- cCGcGGUCGcCGCCgGgGCCGCcGCCaCUaCCg -3'
miRNA:   3'- -GC-CCAGC-GUGG-UgCGGCGaCGG-GA-GG- -5'
14387 3' -62.8 NC_003521.1 + 90840 0.76 0.224367
Target:  5'- gCGGGUgCGCGCCGCccguGCUGCUGCUgaCCa -3'
miRNA:   3'- -GCCCA-GCGUGGUG----CGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 91837 0.76 0.245351
Target:  5'- aCGGGcgugaaggugCGCGCCAgcacgcggaugaUGgCGCUGCCCUCCa -3'
miRNA:   3'- -GCCCa---------GCGUGGU------------GCgGCGACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 208958 0.75 0.292173
Target:  5'- gCGGuaccgcUCGCACCGCGCCGCcGUCUUCUu -3'
miRNA:   3'- -GCCc-----AGCGUGGUGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 205901 0.73 0.338637
Target:  5'- aGGGUCuGCGCCGCuacCUGCUGCgCUUCg -3'
miRNA:   3'- gCCCAG-CGUGGUGc--GGCGACGgGAGG- -5'
14387 3' -62.8 NC_003521.1 + 122109 0.73 0.367504
Target:  5'- cCGGuGcCGCGCCccuCGCCcaugagcCUGCCCUCCa -3'
miRNA:   3'- -GCC-CaGCGUGGu--GCGGc------GACGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.