miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14397 3' -56.5 NC_003521.1 + 73186 0.66 0.953437
Target:  5'- -cGGAGCUGgcCGGCAucGACGU-GACCGa -3'
miRNA:   3'- gaCCUCGAC--GUCGUc-CUGCAgUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 184163 0.66 0.953437
Target:  5'- cCUGGuGC-GCgAGCGGGAgGUgcACCGg -3'
miRNA:   3'- -GACCuCGaCG-UCGUCCUgCAguUGGC- -5'
14397 3' -56.5 NC_003521.1 + 188737 0.66 0.953437
Target:  5'- aUGGAGC-GCGGCccucauGGugGUC-GCUGu -3'
miRNA:   3'- gACCUCGaCGUCGu-----CCugCAGuUGGC- -5'
14397 3' -56.5 NC_003521.1 + 237841 0.66 0.953437
Target:  5'- aCUGGGGUcgGCAGCcuuucGGugGU--ACCGg -3'
miRNA:   3'- -GACCUCGa-CGUCGu----CCugCAguUGGC- -5'
14397 3' -56.5 NC_003521.1 + 190530 0.66 0.949466
Target:  5'- -aGGAGCgaggugcggcgGCAGCAGcGGCGgaccCGGCUGc -3'
miRNA:   3'- gaCCUCGa----------CGUCGUC-CUGCa---GUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 71303 0.66 0.949466
Target:  5'- cCUGGGGCaccagcaccUGgGGCGGcGGCGUCcgauacAGCCGc -3'
miRNA:   3'- -GACCUCG---------ACgUCGUC-CUGCAG------UUGGC- -5'
14397 3' -56.5 NC_003521.1 + 157052 0.66 0.949466
Target:  5'- -aGGAGC-GCGGCGGGGgGcgCcGCCa -3'
miRNA:   3'- gaCCUCGaCGUCGUCCUgCa-GuUGGc -5'
14397 3' -56.5 NC_003521.1 + 206237 0.66 0.949466
Target:  5'- uCUGcGcGCgccUGCAGCccGGCGUCAGCCu -3'
miRNA:   3'- -GAC-CuCG---ACGUCGucCUGCAGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 34334 0.66 0.949466
Target:  5'- uUGGaAGCgGC-GCAGGGCGgaGGCCGu -3'
miRNA:   3'- gACC-UCGaCGuCGUCCUGCagUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 236341 0.66 0.949057
Target:  5'- cCUGGGuCUGCucuGCuGGAucgccgcccagacCGUCAGCCGc -3'
miRNA:   3'- -GACCUcGACGu--CGuCCU-------------GCAGUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 197315 0.66 0.945276
Target:  5'- -gGGGGCgGCAgGCGcugacGGAUGUUGGCCGc -3'
miRNA:   3'- gaCCUCGaCGU-CGU-----CCUGCAGUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 108567 0.66 0.945276
Target:  5'- uUGGcGUUGCGGCccAGGugGUcCAACUu -3'
miRNA:   3'- gACCuCGACGUCG--UCCugCA-GUUGGc -5'
14397 3' -56.5 NC_003521.1 + 137200 0.66 0.945276
Target:  5'- gCUGGAGUcgGCGGcCGGGACGcccuucuuUCAgaucccccgcgcACCGg -3'
miRNA:   3'- -GACCUCGa-CGUC-GUCCUGC--------AGU------------UGGC- -5'
14397 3' -56.5 NC_003521.1 + 112853 0.66 0.945276
Target:  5'- aUGGccgagcugccccAGCUGCucccGCGGcuggccgacGACGUCAGCCGc -3'
miRNA:   3'- gACC------------UCGACGu---CGUC---------CUGCAGUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 115374 0.66 0.945276
Target:  5'- gCUGGccagGGCcgGCAuguGCAGGGCGcgggCGGCCGc -3'
miRNA:   3'- -GACC----UCGa-CGU---CGUCCUGCa---GUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 63893 0.66 0.945276
Target:  5'- -gGGAGCUGCAGCAGu-UGggCAcCCa -3'
miRNA:   3'- gaCCUCGACGUCGUCcuGCa-GUuGGc -5'
14397 3' -56.5 NC_003521.1 + 97963 0.66 0.945276
Target:  5'- gCUGcGAcuGCUG-AGCAGGACG-CuGCCGa -3'
miRNA:   3'- -GAC-CU--CGACgUCGUCCUGCaGuUGGC- -5'
14397 3' -56.5 NC_003521.1 + 212048 0.66 0.945276
Target:  5'- -cGGAGCgcagaaagUGCAGCgcuAGGGCGguggcgCGGCCc -3'
miRNA:   3'- gaCCUCG--------ACGUCG---UCCUGCa-----GUUGGc -5'
14397 3' -56.5 NC_003521.1 + 208849 0.66 0.945276
Target:  5'- -aGGAGCuguacaUGCGGCuGGACGgc-ACCa -3'
miRNA:   3'- gaCCUCG------ACGUCGuCCUGCaguUGGc -5'
14397 3' -56.5 NC_003521.1 + 140491 0.66 0.945276
Target:  5'- -aGGAGCUGCAGCAccuGA-GcCGGCUGa -3'
miRNA:   3'- gaCCUCGACGUCGUc--CUgCaGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.