miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14397 3' -56.5 NC_003521.1 + 137200 0.66 0.945276
Target:  5'- gCUGGAGUcgGCGGcCGGGACGcccuucuuUCAgaucccccgcgcACCGg -3'
miRNA:   3'- -GACCUCGa-CGUC-GUCCUGC--------AGU------------UGGC- -5'
14397 3' -56.5 NC_003521.1 + 200889 0.66 0.940865
Target:  5'- gCUGGAGCUGCuGGCggAGGACaUCcACa- -3'
miRNA:   3'- -GACCUCGACG-UCG--UCCUGcAGuUGgc -5'
14397 3' -56.5 NC_003521.1 + 114576 0.66 0.940865
Target:  5'- ----cGCUGCAGUAcucGGGCGUgGACCu -3'
miRNA:   3'- gaccuCGACGUCGU---CCUGCAgUUGGc -5'
14397 3' -56.5 NC_003521.1 + 12917 0.66 0.940865
Target:  5'- cCUGGcGCUgGUGGCGGGACcagGGCCGg -3'
miRNA:   3'- -GACCuCGA-CGUCGUCCUGcagUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 155258 0.66 0.940865
Target:  5'- -gGGGGCgGCGGCGGcGGCGccUCAGgcCCGu -3'
miRNA:   3'- gaCCUCGaCGUCGUC-CUGC--AGUU--GGC- -5'
14397 3' -56.5 NC_003521.1 + 191085 0.66 0.940865
Target:  5'- gUGGuGGCgGCGGCGGGcuGCGUCucguCCa -3'
miRNA:   3'- gACC-UCGaCGUCGUCC--UGCAGuu--GGc -5'
14397 3' -56.5 NC_003521.1 + 182399 0.66 0.940865
Target:  5'- -cGGcagcGCUGCGGCuu--CGUCAACCGc -3'
miRNA:   3'- gaCCu---CGACGUCGuccuGCAGUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 139794 0.66 0.940865
Target:  5'- aUGGAGCUGCA-CGGG-CGU--GCCc -3'
miRNA:   3'- gACCUCGACGUcGUCCuGCAguUGGc -5'
14397 3' -56.5 NC_003521.1 + 159773 0.66 0.940865
Target:  5'- gCUGGGGUUgGC-GCAGuGCGUCAACa- -3'
miRNA:   3'- -GACCUCGA-CGuCGUCcUGCAGUUGgc -5'
14397 3' -56.5 NC_003521.1 + 38161 0.66 0.940411
Target:  5'- -gGGuGUaGguGCAGGGCGUCccagcggGGCCGc -3'
miRNA:   3'- gaCCuCGaCguCGUCCUGCAG-------UUGGC- -5'
14397 3' -56.5 NC_003521.1 + 190993 0.66 0.93623
Target:  5'- -cGGcAGCaggcGCAGguGGACGUgggCAGCCu -3'
miRNA:   3'- gaCC-UCGa---CGUCguCCUGCA---GUUGGc -5'
14397 3' -56.5 NC_003521.1 + 115556 0.66 0.93623
Target:  5'- -cGGAGCgccgUGCuGCGcGGACGUUGAUCu -3'
miRNA:   3'- gaCCUCG----ACGuCGU-CCUGCAGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 94150 0.66 0.93623
Target:  5'- -gGGAGCUGCGGUcGGcuuCGUUG-CCGu -3'
miRNA:   3'- gaCCUCGACGUCGuCCu--GCAGUuGGC- -5'
14397 3' -56.5 NC_003521.1 + 186860 0.66 0.93623
Target:  5'- -cGGcGGCgUGCAGCAcGGcuCGUCGGCCc -3'
miRNA:   3'- gaCC-UCG-ACGUCGU-CCu-GCAGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 29474 0.66 0.93623
Target:  5'- ---cGGCUGCuGCGGGACccCAACCa -3'
miRNA:   3'- gaccUCGACGuCGUCCUGcaGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 122108 0.66 0.93623
Target:  5'- gUGcGGCUGCAGC-GG-CGUCucGCCGc -3'
miRNA:   3'- gACcUCGACGUCGuCCuGCAGu-UGGC- -5'
14397 3' -56.5 NC_003521.1 + 180104 0.66 0.93623
Target:  5'- -gGGAGg-GCAGCGGcGugGUgCGACCc -3'
miRNA:   3'- gaCCUCgaCGUCGUC-CugCA-GUUGGc -5'
14397 3' -56.5 NC_003521.1 + 109974 0.66 0.93623
Target:  5'- cCUGcgcCUGCAGUAGGGCGgccuGCCGg -3'
miRNA:   3'- -GACcucGACGUCGUCCUGCagu-UGGC- -5'
14397 3' -56.5 NC_003521.1 + 219583 0.66 0.935754
Target:  5'- gUGGGGCUcGcCAGCAGGGguucugUGUCGcucuuucGCCGa -3'
miRNA:   3'- gACCUCGA-C-GUCGUCCU------GCAGU-------UGGC- -5'
14397 3' -56.5 NC_003521.1 + 119823 0.66 0.935754
Target:  5'- uCUGGAGCaGCGGCuccgacuccgacgAGGACG--AGCUGg -3'
miRNA:   3'- -GACCUCGaCGUCG-------------UCCUGCagUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.