miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14397 3' -56.5 NC_003521.1 + 5517 0.76 0.472125
Target:  5'- -aGGAGUaGCAGCAGcGACGgugacggCAGCCGg -3'
miRNA:   3'- gaCCUCGaCGUCGUC-CUGCa------GUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 12917 0.66 0.940865
Target:  5'- cCUGGcGCUgGUGGCGGGACcagGGCCGg -3'
miRNA:   3'- -GACCuCGA-CGUCGUCCUGcagUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 14438 0.68 0.863252
Target:  5'- gUGGuGCacacgGCccuGCGGcGGCGUCAGCCGc -3'
miRNA:   3'- gACCuCGa----CGu--CGUC-CUGCAGUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 15875 0.69 0.855795
Target:  5'- -cGGAGCUGguGCucuguauGGGCGgCAGCaCGc -3'
miRNA:   3'- gaCCUCGACguCGu------CCUGCaGUUG-GC- -5'
14397 3' -56.5 NC_003521.1 + 18864 0.67 0.926284
Target:  5'- gUGGAGCUGUcgugucagcugAGCAGcGACGagGACg- -3'
miRNA:   3'- gACCUCGACG-----------UCGUC-CUGCagUUGgc -5'
14397 3' -56.5 NC_003521.1 + 19858 0.74 0.586815
Target:  5'- gUGGAGCUGCAGCGcucccugcugacGGccGCGUCGGCg- -3'
miRNA:   3'- gACCUCGACGUCGU------------CC--UGCAGUUGgc -5'
14397 3' -56.5 NC_003521.1 + 21949 0.66 0.945276
Target:  5'- gCUGGAGCagugggcgagcGCGGCGGGAC-UCGuucgguuucGCCGc -3'
miRNA:   3'- -GACCUCGa----------CGUCGUCCUGcAGU---------UGGC- -5'
14397 3' -56.5 NC_003521.1 + 22896 0.68 0.884418
Target:  5'- cCUGuGGCUGCAGCAGuACGcCAaggACCa -3'
miRNA:   3'- -GACcUCGACGUCGUCcUGCaGU---UGGc -5'
14397 3' -56.5 NC_003521.1 + 29474 0.66 0.93623
Target:  5'- ---cGGCUGCuGCGGGACccCAACCa -3'
miRNA:   3'- gaccUCGACGuCGUCCUGcaGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 31701 0.7 0.806406
Target:  5'- gUGGGGCggcgGCAGCaugugcgcgugcuGGGACGccgCGGCCa -3'
miRNA:   3'- gACCUCGa---CGUCG-------------UCCUGCa--GUUGGc -5'
14397 3' -56.5 NC_003521.1 + 34334 0.66 0.949466
Target:  5'- uUGGaAGCgGC-GCAGGGCGgaGGCCGu -3'
miRNA:   3'- gACC-UCGaCGuCGUCCUGCagUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 38161 0.66 0.940411
Target:  5'- -gGGuGUaGguGCAGGGCGUCccagcggGGCCGc -3'
miRNA:   3'- gaCCuCGaCguCGUCCUGCAG-------UUGGC- -5'
14397 3' -56.5 NC_003521.1 + 38288 0.67 0.909673
Target:  5'- -cGGcGC-GCAGCAGGugcgagagcuCGUCGGCCa -3'
miRNA:   3'- gaCCuCGaCGUCGUCCu---------GCAGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 38456 0.78 0.354355
Target:  5'- gCUGGAGCaggucgGCGGCcguGGGACGUUGACCa -3'
miRNA:   3'- -GACCUCGa-----CGUCG---UCCUGCAGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 43680 0.68 0.863252
Target:  5'- -aGGAGCaGCAGCAGGAgGagaCGACg- -3'
miRNA:   3'- gaCCUCGaCGUCGUCCUgCa--GUUGgc -5'
14397 3' -56.5 NC_003521.1 + 44364 0.7 0.802088
Target:  5'- gCUGGGGCUGCGGCccacgcccgaggccgAGGuGCGUUAuuCCa -3'
miRNA:   3'- -GACCUCGACGUCG---------------UCC-UGCAGUu-GGc -5'
14397 3' -56.5 NC_003521.1 + 44843 0.73 0.616558
Target:  5'- cCUGGGGCUGguGaCAGGAaagGaCAACCGc -3'
miRNA:   3'- -GACCUCGACguC-GUCCUg--CaGUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 45198 0.74 0.567131
Target:  5'- -cGGAGCUGCAGCA--ACG-CGACCa -3'
miRNA:   3'- gaCCUCGACGUCGUccUGCaGUUGGc -5'
14397 3' -56.5 NC_003521.1 + 45241 0.72 0.695816
Target:  5'- cCUGGAGCUGUAGCGucg-GUUAACCGc -3'
miRNA:   3'- -GACCUCGACGUCGUccugCAGUUGGC- -5'
14397 3' -56.5 NC_003521.1 + 46446 0.68 0.863252
Target:  5'- -cGGGGCUGCG--GGGGCugGUCGGCCu -3'
miRNA:   3'- gaCCUCGACGUcgUCCUG--CAGUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.