miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14397 5' -59.2 NC_003521.1 + 129578 0.66 0.864026
Target:  5'- uGGCUGCUccgccGCGCcGCGCCG--GCCGc -3'
miRNA:   3'- -UCGACGAc----CGCGcCGCGGUauUGGUc -5'
14397 5' -59.2 NC_003521.1 + 207138 0.66 0.864026
Target:  5'- cAGCUGCagcguuacGUGCGG-GCCAcGGCCGGu -3'
miRNA:   3'- -UCGACGac------CGCGCCgCGGUaUUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 86873 0.66 0.864026
Target:  5'- cGCUGUUcgacaccaugacGGCGCGGCGg-GUGGCCGa -3'
miRNA:   3'- uCGACGA------------CCGCGCCGCggUAUUGGUc -5'
14397 5' -59.2 NC_003521.1 + 8413 0.66 0.864026
Target:  5'- aGGC-GCUGGCGUugccgugccgcaGGCGCa---GCCAGc -3'
miRNA:   3'- -UCGaCGACCGCG------------CCGCGguauUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 138392 0.66 0.864026
Target:  5'- cGGcCUGC-GGCGCGucuggauCGCCGUgugGACCAGc -3'
miRNA:   3'- -UC-GACGaCCGCGCc------GCGGUA---UUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 145101 0.66 0.864026
Target:  5'- cGcCUGCUGGaCcUGGCGCCuaacuACCGGc -3'
miRNA:   3'- uC-GACGACC-GcGCCGCGGuau--UGGUC- -5'
14397 5' -59.2 NC_003521.1 + 102593 0.66 0.864026
Target:  5'- cGggGCUGGCGCuGGCcacgucgucGUCGUGcaGCCAGa -3'
miRNA:   3'- uCgaCGACCGCG-CCG---------CGGUAU--UGGUC- -5'
14397 5' -59.2 NC_003521.1 + 28854 0.66 0.864026
Target:  5'- gAGCUGCggcGGCGCGGCacggucgagucGCCcaAGCUc- -3'
miRNA:   3'- -UCGACGa--CCGCGCCG-----------CGGuaUUGGuc -5'
14397 5' -59.2 NC_003521.1 + 88295 0.66 0.864026
Target:  5'- cAGCgUGCUGGgGCuGaGCGCCcugGACCc- -3'
miRNA:   3'- -UCG-ACGACCgCG-C-CGCGGua-UUGGuc -5'
14397 5' -59.2 NC_003521.1 + 226014 0.66 0.864026
Target:  5'- -uCUGgaUGGCGUacacGGCGCCG-AACCAGu -3'
miRNA:   3'- ucGACg-ACCGCG----CCGCGGUaUUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 74507 0.66 0.864026
Target:  5'- cAGCUGCUGGagcagaGCGGCaUCA-AGCUGGu -3'
miRNA:   3'- -UCGACGACCg-----CGCCGcGGUaUUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 197317 0.66 0.864026
Target:  5'- gGGCgGCaGGCGCugacggauguuGGcCGCCGcGGCCAGc -3'
miRNA:   3'- -UCGaCGaCCGCG-----------CC-GCGGUaUUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 238350 0.66 0.856654
Target:  5'- ---aGCUGGC-CGGCGCCGUcGCg-- -3'
miRNA:   3'- ucgaCGACCGcGCCGCGGUAuUGguc -5'
14397 5' -59.2 NC_003521.1 + 177757 0.66 0.856654
Target:  5'- cAGCUGUacggGGuCGCGGUcgucGCCAgGGCCGa -3'
miRNA:   3'- -UCGACGa---CC-GCGCCG----CGGUaUUGGUc -5'
14397 5' -59.2 NC_003521.1 + 45107 0.66 0.856654
Target:  5'- cAGCcGCUaccUGCGGCGCCGUAuguucgugcACCGGc -3'
miRNA:   3'- -UCGaCGAcc-GCGCCGCGGUAU---------UGGUC- -5'
14397 5' -59.2 NC_003521.1 + 40741 0.66 0.856654
Target:  5'- cAGCugugUGCUGGCGaGGCcaaGCCGgcgguaAGCCAGc -3'
miRNA:   3'- -UCG----ACGACCGCgCCG---CGGUa-----UUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 197258 0.66 0.856654
Target:  5'- gAGCggUGCUuGaCGCGGCGCCGgcGgCGGg -3'
miRNA:   3'- -UCG--ACGAcC-GCGCCGCGGUauUgGUC- -5'
14397 5' -59.2 NC_003521.1 + 73145 0.66 0.856654
Target:  5'- gGGCaGC-GGCgGCGGCGCCGccucGGCCu- -3'
miRNA:   3'- -UCGaCGaCCG-CGCCGCGGUa---UUGGuc -5'
14397 5' -59.2 NC_003521.1 + 198023 0.66 0.856654
Target:  5'- cGUUGC-GGCGCGuGCaGCC---GCCGGg -3'
miRNA:   3'- uCGACGaCCGCGC-CG-CGGuauUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 126942 0.66 0.856654
Target:  5'- uGCUGCgGGCGacacgugaCGGCGCUuacACCAc -3'
miRNA:   3'- uCGACGaCCGC--------GCCGCGGuauUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.