miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14397 5' -59.2 NC_003521.1 + 13 0.7 0.619874
Target:  5'- cAGCgaGUgUGGCGCGuGUuuGCCGUGGCCGGg -3'
miRNA:   3'- -UCGa-CG-ACCGCGC-CG--CGGUAUUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 354 0.74 0.41502
Target:  5'- gAGCUGCcGGagGCGGCGCCugcGACCGc -3'
miRNA:   3'- -UCGACGaCCg-CGCCGCGGua-UUGGUc -5'
14397 5' -59.2 NC_003521.1 + 390 0.66 0.833429
Target:  5'- gAGUgugUGCUGGCGCGcG-GCUGUGACUg- -3'
miRNA:   3'- -UCG---ACGACCGCGC-CgCGGUAUUGGuc -5'
14397 5' -59.2 NC_003521.1 + 419 0.66 0.856654
Target:  5'- cAGCugugUGCUGGCGaGGCcaaGCCGgcgguaAGCCAGc -3'
miRNA:   3'- -UCG----ACGACCGCgCCG---CGGUa-----UUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 1584 0.67 0.773625
Target:  5'- cGCUGCUGacggccGUGCaGCGCCAcauccACCAGc -3'
miRNA:   3'- uCGACGAC------CGCGcCGCGGUau---UGGUC- -5'
14397 5' -59.2 NC_003521.1 + 5540 0.68 0.717694
Target:  5'- cGGCaGCcGGCGCGGCcGCC---GCCAu -3'
miRNA:   3'- -UCGaCGaCCGCGCCG-CGGuauUGGUc -5'
14397 5' -59.2 NC_003521.1 + 6079 0.66 0.849093
Target:  5'- uGCgacgGCcGGUGCGGCGgCGUuccGCCAc -3'
miRNA:   3'- uCGa---CGaCCGCGCCGCgGUAu--UGGUc -5'
14397 5' -59.2 NC_003521.1 + 6709 0.66 0.840565
Target:  5'- cGCUGCUGGgucucgcCGUGGUGCag-GGCCuGa -3'
miRNA:   3'- uCGACGACC-------GCGCCGCGguaUUGGuC- -5'
14397 5' -59.2 NC_003521.1 + 7810 0.68 0.727234
Target:  5'- cGGCaGCUGGa-CGGCGUCAaGGCCAu -3'
miRNA:   3'- -UCGaCGACCgcGCCGCGGUaUUGGUc -5'
14397 5' -59.2 NC_003521.1 + 8051 0.66 0.856654
Target:  5'- cAGCUGCUGaGgGCaGCGCa--GACCGu -3'
miRNA:   3'- -UCGACGAC-CgCGcCGCGguaUUGGUc -5'
14397 5' -59.2 NC_003521.1 + 8413 0.66 0.864026
Target:  5'- aGGC-GCUGGCGUugccgugccgcaGGCGCa---GCCAGc -3'
miRNA:   3'- -UCGaCGACCGCG------------CCGCGguauUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 12914 0.66 0.856654
Target:  5'- cAGC--CUGGCGCuGGUGgCGgGACCAGg -3'
miRNA:   3'- -UCGacGACCGCG-CCGCgGUaUUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 13272 0.72 0.513323
Target:  5'- uAGCUGUauggugGGUGaCGGCGUcuuCAUAGCCAGa -3'
miRNA:   3'- -UCGACGa-----CCGC-GCCGCG---GUAUUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 13981 0.67 0.808675
Target:  5'- gGGcCUGCccGGCGCGGCGgCGggcgagGACCc- -3'
miRNA:   3'- -UC-GACGa-CCGCGCCGCgGUa-----UUGGuc -5'
14397 5' -59.2 NC_003521.1 + 14796 0.74 0.390265
Target:  5'- uGCUGCUGGacugguuCGGCGCCGUGuacGCCAu -3'
miRNA:   3'- uCGACGACCgc-----GCCGCGGUAU---UGGUc -5'
14397 5' -59.2 NC_003521.1 + 16199 0.67 0.817085
Target:  5'- --gUGCUGGCccuucgaggugGCGGCGCCcu-GCCGc -3'
miRNA:   3'- ucgACGACCG-----------CGCCGCGGuauUGGUc -5'
14397 5' -59.2 NC_003521.1 + 16283 0.66 0.849093
Target:  5'- -cCUGCUgGGCGCcgugGGUGCCu--ACCGGc -3'
miRNA:   3'- ucGACGA-CCGCG----CCGCGGuauUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 16736 0.7 0.639603
Target:  5'- cGGCgaccGCcGGCGCGcGCGCCc--GCCGGa -3'
miRNA:   3'- -UCGa---CGaCCGCGC-CGCGGuauUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 18173 0.67 0.791417
Target:  5'- cAGCgUGgaGGCGCuGcGCGCCu--GCCGGc -3'
miRNA:   3'- -UCG-ACgaCCGCG-C-CGCGGuauUGGUC- -5'
14397 5' -59.2 NC_003521.1 + 18322 0.67 0.800116
Target:  5'- uGCccaGC-GGCGUGGUGCUGUugGACCAGu -3'
miRNA:   3'- uCGa--CGaCCGCGCCGCGGUA--UUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.