miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14399 3' -61.3 NC_003521.1 + 105176 0.67 0.764847
Target:  5'- gCCGCC-GaCGCUGGGccccccgccgaUCGUGGGaUCCgCCc -3'
miRNA:   3'- -GGUGGaC-GCGGCCC-----------AGUACCC-AGG-GG- -5'
14399 3' -61.3 NC_003521.1 + 194152 0.67 0.762215
Target:  5'- uCCACCUcgGCGggcgguuccaucgcCCGGGUUagGGGUUCUg -3'
miRNA:   3'- -GGUGGA--CGC--------------GGCCCAGuaCCCAGGGg -5'
14399 3' -61.3 NC_003521.1 + 128201 0.67 0.75604
Target:  5'- uCCACCUGgGCUGGGU-GUaGaGcCCCCu -3'
miRNA:   3'- -GGUGGACgCGGCCCAgUAcC-CaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 148849 0.67 0.753379
Target:  5'- gCGCCggaucgGcCGCCGGGUuccgcccucgccgcCAcgGGGUCCgCCg -3'
miRNA:   3'- gGUGGa-----C-GCGGCCCA--------------GUa-CCCAGG-GG- -5'
14399 3' -61.3 NC_003521.1 + 175351 0.68 0.738151
Target:  5'- gUCACCU-CGuCCaGGGUgCGuUGGGUCUCCu -3'
miRNA:   3'- -GGUGGAcGC-GG-CCCA-GU-ACCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 139203 0.68 0.738151
Target:  5'- gCUACCaGCGCCGGGcCcUGGccgacGUCCUg -3'
miRNA:   3'- -GGUGGaCGCGGCCCaGuACC-----CAGGGg -5'
14399 3' -61.3 NC_003521.1 + 223469 0.68 0.719946
Target:  5'- gCCGCC-GCGCCGGcGUCAc-GG-CCCg -3'
miRNA:   3'- -GGUGGaCGCGGCC-CAGUacCCaGGGg -5'
14399 3' -61.3 NC_003521.1 + 166646 0.68 0.705194
Target:  5'- gCGCCggGCGCCGcGGcgCAgcggccagcggcaccUGGG-CCCCg -3'
miRNA:   3'- gGUGGa-CGCGGC-CCa-GU---------------ACCCaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 194774 0.68 0.701484
Target:  5'- cCCGCCcgGUGCCaacGUCAUGGcG-CCCCu -3'
miRNA:   3'- -GGUGGa-CGCGGcc-CAGUACC-CaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 151808 0.68 0.701484
Target:  5'- aCCGCCgugGCGCCGG----UGGGgCCCg -3'
miRNA:   3'- -GGUGGa--CGCGGCCcaguACCCaGGGg -5'
14399 3' -61.3 NC_003521.1 + 153077 0.68 0.701484
Target:  5'- gCCGCCgggGC-CCGGG-CcgGGGcCCaCCa -3'
miRNA:   3'- -GGUGGa--CGcGGCCCaGuaCCCaGG-GG- -5'
14399 3' -61.3 NC_003521.1 + 226843 0.68 0.692174
Target:  5'- cCCGCCgccGCGCCGGGcaggcccaUCAgGGcGUCCa- -3'
miRNA:   3'- -GGUGGa--CGCGGCCC--------AGUaCC-CAGGgg -5'
14399 3' -61.3 NC_003521.1 + 18310 0.68 0.692174
Target:  5'- uUCGCCUGUGCuUGGGacuGUGGG-CCUCg -3'
miRNA:   3'- -GGUGGACGCG-GCCCag-UACCCaGGGG- -5'
14399 3' -61.3 NC_003521.1 + 106486 0.69 0.682822
Target:  5'- gCAUCgGCGgCGGG----GGGUCCCCg -3'
miRNA:   3'- gGUGGaCGCgGCCCaguaCCCAGGGG- -5'
14399 3' -61.3 NC_003521.1 + 181198 0.69 0.673434
Target:  5'- aCGCCUGCgaGCCGcGGUCGccgccgGGG-CCgCCg -3'
miRNA:   3'- gGUGGACG--CGGC-CCAGUa-----CCCaGG-GG- -5'
14399 3' -61.3 NC_003521.1 + 92679 0.69 0.672493
Target:  5'- -aGCCUcggcgagGUGCCGGGUCccugggacacgAUGaGGUCCCa -3'
miRNA:   3'- ggUGGA-------CGCGGCCCAG-----------UAC-CCAGGGg -5'
14399 3' -61.3 NC_003521.1 + 177983 0.69 0.654578
Target:  5'- aCCACCU--GCCGGGUCAgagagcGGGccaugCCCa -3'
miRNA:   3'- -GGUGGAcgCGGCCCAGUa-----CCCa----GGGg -5'
14399 3' -61.3 NC_003521.1 + 156625 0.69 0.645123
Target:  5'- aCCACCUGUGUCGGGugcUCAUGaacaccaucaGUCgCCa -3'
miRNA:   3'- -GGUGGACGCGGCCC---AGUACc---------CAGgGG- -5'
14399 3' -61.3 NC_003521.1 + 36843 0.69 0.635661
Target:  5'- gCugCUGUGCCGGGUagagcaccugaCGUGGG-CCg- -3'
miRNA:   3'- gGugGACGCGGCCCA-----------GUACCCaGGgg -5'
14399 3' -61.3 NC_003521.1 + 214806 0.69 0.626195
Target:  5'- aCCGCCgucggGCGCCGGGcgCGgcgacgGcGGUUCCa -3'
miRNA:   3'- -GGUGGa----CGCGGCCCa-GUa-----C-CCAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.