miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14399 5' -57.9 NC_003521.1 + 77267 0.66 0.909225
Target:  5'- aGGGGGACacaCAGCGCAUCa--GACGGa -3'
miRNA:   3'- gUCCUCUGg--GUUGCGUGGgacCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 206532 0.66 0.909225
Target:  5'- --cGAGcCCCucACG-GCCCUGGGCGAa -3'
miRNA:   3'- gucCUCuGGGu-UGCgUGGGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 135998 0.66 0.909225
Target:  5'- gAGGAGAUCCAGCuGCACUcgCUGuACGc -3'
miRNA:   3'- gUCCUCUGGGUUG-CGUGG--GACcUGCu -5'
14399 5' -57.9 NC_003521.1 + 108272 0.66 0.909225
Target:  5'- -cGGAGAagaCGGCgGCACCgaGGGCGGu -3'
miRNA:   3'- guCCUCUgg-GUUG-CGUGGgaCCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 148642 0.66 0.909225
Target:  5'- gGGGAGGCCagggcauCGCcccgACCCccGGGCGAg -3'
miRNA:   3'- gUCCUCUGGguu----GCG----UGGGa-CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 3970 0.66 0.907477
Target:  5'- -cGGAgGACCCGGgGCACCgucagcgcggagguCUGGcGCGAg -3'
miRNA:   3'- guCCU-CUGGGUUgCGUGG--------------GACC-UGCU- -5'
14399 5' -57.9 NC_003521.1 + 90382 0.66 0.903322
Target:  5'- cCAGGAGgACCCcgGGCGCGCucuCCUGcacGCGAc -3'
miRNA:   3'- -GUCCUC-UGGG--UUGCGUG---GGACc--UGCU- -5'
14399 5' -57.9 NC_003521.1 + 188690 0.66 0.903322
Target:  5'- gCGGGGGAuacgcggguCCCGugGCGCCCauUGGuaACGu -3'
miRNA:   3'- -GUCCUCU---------GGGUugCGUGGG--ACC--UGCu -5'
14399 5' -57.9 NC_003521.1 + 6238 0.66 0.903322
Target:  5'- -uGGAGA-CCGGCGCuCCCgcGGACGc -3'
miRNA:   3'- guCCUCUgGGUUGCGuGGGa-CCUGCu -5'
14399 5' -57.9 NC_003521.1 + 157608 0.66 0.903322
Target:  5'- gCGGGAGGCCguACGCugCUguuucGACGu -3'
miRNA:   3'- -GUCCUCUGGguUGCGugGGac---CUGCu -5'
14399 5' -57.9 NC_003521.1 + 91420 0.66 0.903322
Target:  5'- aCAGGGcGACCguGCGCAUgcgCCUGGGgGc -3'
miRNA:   3'- -GUCCU-CUGGguUGCGUG---GGACCUgCu -5'
14399 5' -57.9 NC_003521.1 + 156925 0.67 0.899062
Target:  5'- gCGGGGGACUUcgcgccacccgcaGAUGCACCCgaagacugggucgaGGACGGa -3'
miRNA:   3'- -GUCCUCUGGG-------------UUGCGUGGGa-------------CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 5407 0.67 0.897204
Target:  5'- -cGGGGGCCU--CGC-CCgaGGACGAg -3'
miRNA:   3'- guCCUCUGGGuuGCGuGGgaCCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 42741 0.67 0.897204
Target:  5'- aAGGGcACCguGCGCGCCgaGGGCa- -3'
miRNA:   3'- gUCCUcUGGguUGCGUGGgaCCUGcu -5'
14399 5' -57.9 NC_003521.1 + 55076 0.67 0.897204
Target:  5'- cUAGGcGcUCCGGCGCACCCgcucGGCGAu -3'
miRNA:   3'- -GUCCuCuGGGUUGCGUGGGac--CUGCU- -5'
14399 5' -57.9 NC_003521.1 + 46722 0.67 0.897204
Target:  5'- gAGGAa--CUAAC-CACCCUGGACGu -3'
miRNA:   3'- gUCCUcugGGUUGcGUGGGACCUGCu -5'
14399 5' -57.9 NC_003521.1 + 54326 0.67 0.896581
Target:  5'- --cGAGAuCCCGACGgggcucuCGCCCUGGGCc- -3'
miRNA:   3'- gucCUCU-GGGUUGC-------GUGGGACCUGcu -5'
14399 5' -57.9 NC_003521.1 + 112040 0.67 0.890876
Target:  5'- -uGGAGGCcgccaCCGACaGCAUCCUGGA-GAa -3'
miRNA:   3'- guCCUCUG-----GGUUG-CGUGGGACCUgCU- -5'
14399 5' -57.9 NC_003521.1 + 130042 0.67 0.890876
Target:  5'- cCAGGuGGACCUgAGCGagACCCUGGAgGc -3'
miRNA:   3'- -GUCC-UCUGGG-UUGCg-UGGGACCUgCu -5'
14399 5' -57.9 NC_003521.1 + 76201 0.67 0.890876
Target:  5'- aCAGGAugGGCCagaagcccgcCGGCaCGCCCUGGGCGc -3'
miRNA:   3'- -GUCCU--CUGG----------GUUGcGUGGGACCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.