miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
144 5' -54 AC_000006.1 + 21035 1.11 0.000531
Target:  5'- cCACCAUGAACUUGCUGACGGGGGUGCc -3'
miRNA:   3'- -GUGGUACUUGAACGACUGCCCCCACG- -5'
144 5' -54 AC_000006.1 + 23692 0.72 0.32052
Target:  5'- cCAgCAUGAGCUUGCgccgcugcuccagGGCcuGGGGGUcGCg -3'
miRNA:   3'- -GUgGUACUUGAACGa------------CUG--CCCCCA-CG- -5'
144 5' -54 AC_000006.1 + 26990 0.71 0.344141
Target:  5'- aACCAUGAAggggcuCUUGCUGAUuauccuuucccugguGgGGGGUGUa -3'
miRNA:   3'- gUGGUACUU------GAACGACUG---------------C-CCCCACG- -5'
144 5' -54 AC_000006.1 + 9829 0.71 0.367173
Target:  5'- gGCCAUGAGCgaccaGUUGACGGucugcaggccGGGcUGCa -3'
miRNA:   3'- gUGGUACUUGaa---CGACUGCC----------CCC-ACG- -5'
144 5' -54 AC_000006.1 + 20413 0.69 0.444395
Target:  5'- --aCAUGAAgUUGCUGGagaaGGGGaUGCg -3'
miRNA:   3'- gugGUACUUgAACGACUg---CCCCcACG- -5'
144 5' -54 AC_000006.1 + 23523 0.69 0.475618
Target:  5'- gACCuUGGGCgggagGUUGACGGcGGGguagGCg -3'
miRNA:   3'- gUGGuACUUGaa---CGACUGCC-CCCa---CG- -5'
144 5' -54 AC_000006.1 + 12366 0.68 0.529921
Target:  5'- aACC-UGcGCggGCUGugGGGcGUGCa -3'
miRNA:   3'- gUGGuACuUGaaCGACugCCCcCACG- -5'
144 5' -54 AC_000006.1 + 22346 0.67 0.597773
Target:  5'- aUACCAUGAACgUGCUGAUGGaacGUuaccGCg -3'
miRNA:   3'- -GUGGUACUUGaACGACUGCCcc-CA----CG- -5'
144 5' -54 AC_000006.1 + 17068 0.66 0.666735
Target:  5'- gCACCA---GCcaGCUGaACGGGGGcGCc -3'
miRNA:   3'- -GUGGUacuUGaaCGAC-UGCCCCCaCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.