miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1441 3' -55.8 NC_001335.1 + 30318 0.66 0.708742
Target:  5'- uUCGGUACUcAGgacgaagC-CUGGgugGUGCCGGUg -3'
miRNA:   3'- -AGCUAUGA-UCa------GaGGCCa--CGCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 38692 0.66 0.687253
Target:  5'- ----cGCcGGUCUCCGcUGCGUCGaGCa -3'
miRNA:   3'- agcuaUGaUCAGAGGCcACGCGGC-CG- -5'
1441 3' -55.8 NC_001335.1 + 16236 0.66 0.687253
Target:  5'- gUCGcUGCU-GUCUgcguUCGGagccgGCGCUGGCg -3'
miRNA:   3'- -AGCuAUGAuCAGA----GGCCa----CGCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 14102 0.66 0.676424
Target:  5'- cUCGAUGagaccGUCUCUGGUGUaGgCGGUc -3'
miRNA:   3'- -AGCUAUgau--CAGAGGCCACG-CgGCCG- -5'
1441 3' -55.8 NC_001335.1 + 24104 0.66 0.665555
Target:  5'- cUGGUGCccaGGUCUCCgcacagagcGGcgGUGCUGGCg -3'
miRNA:   3'- aGCUAUGa--UCAGAGG---------CCa-CGCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 22544 0.66 0.665555
Target:  5'- aCGGU-CUGGUCcuggUCUGGgacGCGcCCGGUg -3'
miRNA:   3'- aGCUAuGAUCAG----AGGCCa--CGC-GGCCG- -5'
1441 3' -55.8 NC_001335.1 + 32707 0.67 0.610946
Target:  5'- ----cGCaGG-CUCCGGUggauccGCGCCGGCc -3'
miRNA:   3'- agcuaUGaUCaGAGGCCA------CGCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 10328 0.68 0.567522
Target:  5'- cUGAUGCUcaUCUCaCGGgGUGCCGaGCu -3'
miRNA:   3'- aGCUAUGAucAGAG-GCCaCGCGGC-CG- -5'
1441 3' -55.8 NC_001335.1 + 21284 0.68 0.546088
Target:  5'- aCGucgACUGG-CUCCGGga-GCUGGCu -3'
miRNA:   3'- aGCua-UGAUCaGAGGCCacgCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 39662 0.68 0.535467
Target:  5'- aUCGAga-UGGUCagggCCGGUGCGgacaucuguCUGGCg -3'
miRNA:   3'- -AGCUaugAUCAGa---GGCCACGC---------GGCCG- -5'
1441 3' -55.8 NC_001335.1 + 29560 0.69 0.52492
Target:  5'- gCGcuUGCcAGUCU-CGGUGCGaCCGGUg -3'
miRNA:   3'- aGCu-AUGaUCAGAgGCCACGC-GGCCG- -5'
1441 3' -55.8 NC_001335.1 + 13209 0.69 0.50407
Target:  5'- aCGAUGCaGGUCUgguaCCGG-GCaCCGGUg -3'
miRNA:   3'- aGCUAUGaUCAGA----GGCCaCGcGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 24037 0.69 0.50407
Target:  5'- gUCGAUcACagAGcCUCCGGgacCGCCGGUu -3'
miRNA:   3'- -AGCUA-UGa-UCaGAGGCCac-GCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 24730 0.71 0.406078
Target:  5'- aCGAUGa-AG-CUCCgGGUGCGCCguGGCg -3'
miRNA:   3'- aGCUAUgaUCaGAGG-CCACGCGG--CCG- -5'
1441 3' -55.8 NC_001335.1 + 41505 0.78 0.154993
Target:  5'- aCGAggccaGCUAGUC-CUGGUcuGCGCCGGCc -3'
miRNA:   3'- aGCUa----UGAUCAGaGGCCA--CGCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 13014 0.8 0.111207
Target:  5'- aCGAaGCUGaucCUCCGGUGUGCCGGUg -3'
miRNA:   3'- aGCUaUGAUca-GAGGCCACGCGGCCG- -5'
1441 3' -55.8 NC_001335.1 + 5585 1.11 0.000649
Target:  5'- gUCGAUACUAGUCUCCGGUGCGCCGGCc -3'
miRNA:   3'- -AGCUAUGAUCAGAGGCCACGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.