miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14412 3' -56.3 NC_003521.1 + 136177 0.66 0.953495
Target:  5'- aAGAGgCGGCGGCGUCgagcaugaagGCGCucuucuCGCAGu -3'
miRNA:   3'- -UUUUgGCUGCCGCAGa---------CGCG------GCGUUc -5'
14412 3' -56.3 NC_003521.1 + 129201 0.66 0.953495
Target:  5'- --cGCCGGCGGUucgacCUcGuCGCCGCGGGg -3'
miRNA:   3'- uuuUGGCUGCCGca---GA-C-GCGGCGUUC- -5'
14412 3' -56.3 NC_003521.1 + 53958 0.66 0.953495
Target:  5'- uGGGCCGACGaGcCGUgCUGCacgccGCCGCuGGg -3'
miRNA:   3'- uUUUGGCUGC-C-GCA-GACG-----CGGCGuUC- -5'
14412 3' -56.3 NC_003521.1 + 167906 0.66 0.953495
Target:  5'- uAGAgCGGCaGGUGgg-GCGCCGCGAu -3'
miRNA:   3'- uUUUgGCUG-CCGCagaCGCGGCGUUc -5'
14412 3' -56.3 NC_003521.1 + 120608 0.66 0.953495
Target:  5'- --uGCCGGuaGCGUCUGCGUUuuggcagcggGCAGGg -3'
miRNA:   3'- uuuUGGCUgcCGCAGACGCGG----------CGUUC- -5'
14412 3' -56.3 NC_003521.1 + 168544 0.66 0.953495
Target:  5'- -cAGCgCGGCGGCGgcgCUGgcggGCUGCGGGu -3'
miRNA:   3'- uuUUG-GCUGCCGCa--GACg---CGGCGUUC- -5'
14412 3' -56.3 NC_003521.1 + 166609 0.66 0.953495
Target:  5'- --cGCCGACGGC--CUGCuGCUGCu-- -3'
miRNA:   3'- uuuUGGCUGCCGcaGACG-CGGCGuuc -5'
14412 3' -56.3 NC_003521.1 + 71320 0.66 0.953495
Target:  5'- uGGGgCGGCGGCGUCcGauacaGCCGCu-- -3'
miRNA:   3'- uUUUgGCUGCCGCAGaCg----CGGCGuuc -5'
14412 3' -56.3 NC_003521.1 + 40486 0.66 0.953495
Target:  5'- ---uCCG-CGGCG-CgccacgGCGCCGCAGc -3'
miRNA:   3'- uuuuGGCuGCCGCaGa-----CGCGGCGUUc -5'
14412 3' -56.3 NC_003521.1 + 123225 0.66 0.953495
Target:  5'- cGGGGgCGGCGGUaggugGUCguaGCGCCGCGc- -3'
miRNA:   3'- -UUUUgGCUGCCG-----CAGa--CGCGGCGUuc -5'
14412 3' -56.3 NC_003521.1 + 201644 0.66 0.953107
Target:  5'- cAAGAgCGACGaCGUgaacgaaCUGgGCCGCGAGc -3'
miRNA:   3'- -UUUUgGCUGCcGCA-------GACgCGGCGUUC- -5'
14412 3' -56.3 NC_003521.1 + 1417 0.66 0.953107
Target:  5'- cAAGAgCGACGaCGUgaacgaaCUGgGCCGCGAGc -3'
miRNA:   3'- -UUUUgGCUGCcGCA-------GACgCGGCGUUC- -5'
14412 3' -56.3 NC_003521.1 + 84197 0.66 0.94951
Target:  5'- gGAAGCCcAgGGCGUC-GCGCagcaccaggCGCGAGa -3'
miRNA:   3'- -UUUUGGcUgCCGCAGaCGCG---------GCGUUC- -5'
14412 3' -56.3 NC_003521.1 + 182837 0.66 0.94951
Target:  5'- -cGAUCGGCGGCG-CUGacaacaGCaGCGAGg -3'
miRNA:   3'- uuUUGGCUGCCGCaGACg-----CGgCGUUC- -5'
14412 3' -56.3 NC_003521.1 + 127254 0.66 0.94951
Target:  5'- -cGGCuCGuCGGCGUCcaugGCGCC-CAGGc -3'
miRNA:   3'- uuUUG-GCuGCCGCAGa---CGCGGcGUUC- -5'
14412 3' -56.3 NC_003521.1 + 139760 0.66 0.94951
Target:  5'- --uGCCGACGGCaggauccggccGUCgGCGgCCGCcauGGa -3'
miRNA:   3'- uuuUGGCUGCCG-----------CAGaCGC-GGCGu--UC- -5'
14412 3' -56.3 NC_003521.1 + 101862 0.66 0.94951
Target:  5'- -uGGCgGACuGCGUCaUGgGuCCGCAGGg -3'
miRNA:   3'- uuUUGgCUGcCGCAG-ACgC-GGCGUUC- -5'
14412 3' -56.3 NC_003521.1 + 205038 0.66 0.94951
Target:  5'- ---cCCGAUGGauccguuucgucCGUCUGCGCaCGCuguGGa -3'
miRNA:   3'- uuuuGGCUGCC------------GCAGACGCG-GCGu--UC- -5'
14412 3' -56.3 NC_003521.1 + 59859 0.66 0.94951
Target:  5'- uGGGCCGgucaACGGCGa-UGUGCCGcCGAGu -3'
miRNA:   3'- uUUUGGC----UGCCGCagACGCGGC-GUUC- -5'
14412 3' -56.3 NC_003521.1 + 124257 0.66 0.94951
Target:  5'- --cGCCGcGCGGCaugcuugguGUCUGCgGgCGCGAGa -3'
miRNA:   3'- uuuUGGC-UGCCG---------CAGACG-CgGCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.