miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14412 5' -59.8 NC_003521.1 + 129993 0.66 0.85002
Target:  5'- uGCCgcUGCGCCGGcgG---CGGCGCg- -3'
miRNA:   3'- gCGG--ACGCGGCCuaCaugGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 22479 0.66 0.842364
Target:  5'- gGCCUGC-CUGGugAUGaacACCGGCACc- -3'
miRNA:   3'- gCGGACGcGGCC--UACa--UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 7224 0.66 0.842364
Target:  5'- cCGCCggagaucaugGCGCCGuucUGaaGCCGGCACUg -3'
miRNA:   3'- -GCGGa---------CGCGGCcu-ACa-UGGCCGUGAa -5'
14412 5' -59.8 NC_003521.1 + 145024 0.66 0.842364
Target:  5'- uCGCCgacGCGCUGGAucgcgUGgccgAgCGGCACg- -3'
miRNA:   3'- -GCGGa--CGCGGCCU-----ACa---UgGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 138024 0.66 0.842364
Target:  5'- gCGCgUGCGUCGc---UGCCGGCGCa- -3'
miRNA:   3'- -GCGgACGCGGCcuacAUGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 128908 0.66 0.834533
Target:  5'- --gCUGCGCUGGAUGcgguugaggGCCuGGCGCg- -3'
miRNA:   3'- gcgGACGCGGCCUACa--------UGG-CCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 150699 0.66 0.834533
Target:  5'- uGCugCUGCGCCGGcgGcgACUGGCuCUc -3'
miRNA:   3'- gCG--GACGCGGCCuaCa-UGGCCGuGAa -5'
14412 5' -59.8 NC_003521.1 + 234663 0.66 0.834533
Target:  5'- aGCCaGgaGCCGGA---GCCGGCGCa- -3'
miRNA:   3'- gCGGaCg-CGGCCUacaUGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 117645 0.66 0.834533
Target:  5'- cCGCCugcgacUGCGCCGcGAgacgGUgcGCCGGCcCUUc -3'
miRNA:   3'- -GCGG------ACGCGGC-CUa---CA--UGGCCGuGAA- -5'
14412 5' -59.8 NC_003521.1 + 218622 0.66 0.826534
Target:  5'- cCGCCaGCGCgCGGcgGUaagcggccacgGCCGGCGg-- -3'
miRNA:   3'- -GCGGaCGCG-GCCuaCA-----------UGGCCGUgaa -5'
14412 5' -59.8 NC_003521.1 + 28416 0.66 0.826534
Target:  5'- gGCCUGCugaGCCuGGcgGUACCGcuGCugUg -3'
miRNA:   3'- gCGGACG---CGG-CCuaCAUGGC--CGugAa -5'
14412 5' -59.8 NC_003521.1 + 195174 0.66 0.826534
Target:  5'- gGUgUGCGCCGGAccccgcgGaGCCGGCGg-- -3'
miRNA:   3'- gCGgACGCGGCCUa------CaUGGCCGUgaa -5'
14412 5' -59.8 NC_003521.1 + 102452 0.66 0.826534
Target:  5'- uGCCUguuacgGCGCagcaGGAUGaGCUGGCAUa- -3'
miRNA:   3'- gCGGA------CGCGg---CCUACaUGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 73169 0.66 0.826534
Target:  5'- gGCCUGCGaccuggacgCGGAgcugGCCGGCAUc- -3'
miRNA:   3'- gCGGACGCg--------GCCUaca-UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 196749 0.66 0.826534
Target:  5'- gCGCCUGCaCCGucUGcugccccgGCCGGCGCg- -3'
miRNA:   3'- -GCGGACGcGGCcuACa-------UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 143623 0.66 0.818373
Target:  5'- uGCCUGCuGCacaacgucaCGG-UGcACCGGCGCUUc -3'
miRNA:   3'- gCGGACG-CG---------GCCuACaUGGCCGUGAA- -5'
14412 5' -59.8 NC_003521.1 + 148433 0.66 0.818373
Target:  5'- gGCC-GCGCCGGcgGcuccaggggugGCCGGUGCg- -3'
miRNA:   3'- gCGGaCGCGGCCuaCa----------UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 27233 0.66 0.818373
Target:  5'- aGCCUGgucauCGCCGGcUGcUACgUGGCGCUg -3'
miRNA:   3'- gCGGAC-----GCGGCCuAC-AUG-GCCGUGAa -5'
14412 5' -59.8 NC_003521.1 + 211693 0.67 0.801595
Target:  5'- aGCUgGUGCUGGAUGUAgCaGCGCa- -3'
miRNA:   3'- gCGGaCGCGGCCUACAUgGcCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 44244 0.67 0.801595
Target:  5'- cCGCCgUGCGCgGGA-GU-CCGGCGu-- -3'
miRNA:   3'- -GCGG-ACGCGgCCUaCAuGGCCGUgaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.