miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14412 5' -59.8 NC_003521.1 + 76184 0.67 0.791256
Target:  5'- gGCCUGCGUgaggcgccacaGGAUGggccagaagcccGCCGGCACg- -3'
miRNA:   3'- gCGGACGCGg----------CCUACa-----------UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 35884 0.68 0.720057
Target:  5'- uCGUCUcGCGCUGGccgGUGCCacGGCACg- -3'
miRNA:   3'- -GCGGA-CGCGGCCua-CAUGG--CCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 106986 0.68 0.720057
Target:  5'- gGUCgGCGCCuucuguauGGUGUugCGGCACUg -3'
miRNA:   3'- gCGGaCGCGGc-------CUACAugGCCGUGAa -5'
14412 5' -59.8 NC_003521.1 + 46553 0.68 0.748145
Target:  5'- gGCCUcGCGCCGGGUgcugaagcggugGUugCGGUAg-- -3'
miRNA:   3'- gCGGA-CGCGGCCUA------------CAugGCCGUgaa -5'
14412 5' -59.8 NC_003521.1 + 31745 0.67 0.757333
Target:  5'- cCGCCUcCGCCGccucgACCGGCACa- -3'
miRNA:   3'- -GCGGAcGCGGCcuacaUGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 167764 0.67 0.766419
Target:  5'- uCGUCgugGCGCUGG-UGUuggaACCGGUGCUa -3'
miRNA:   3'- -GCGGa--CGCGGCCuACA----UGGCCGUGAa -5'
14412 5' -59.8 NC_003521.1 + 201421 0.67 0.775397
Target:  5'- gGCCUGUGCCaacaGGAccagcUGUACCuGGCcCUg -3'
miRNA:   3'- gCGGACGCGG----CCU-----ACAUGG-CCGuGAa -5'
14412 5' -59.8 NC_003521.1 + 204135 0.67 0.775397
Target:  5'- gGCCagGCGCCGGAgc--CCGGC-CUc -3'
miRNA:   3'- gCGGa-CGCGGCCUacauGGCCGuGAa -5'
14412 5' -59.8 NC_003521.1 + 144175 0.67 0.775397
Target:  5'- aCGCCgGCGCCGcc--UGCCGcGCGCUg -3'
miRNA:   3'- -GCGGaCGCGGCcuacAUGGC-CGUGAa -5'
14412 5' -59.8 NC_003521.1 + 148831 0.69 0.691348
Target:  5'- cCGCCUGCccucgGCCGaGGUgcGUGCCGuGCACc- -3'
miRNA:   3'- -GCGGACG-----CGGC-CUA--CAUGGC-CGUGaa -5'
14412 5' -59.8 NC_003521.1 + 122221 0.69 0.681678
Target:  5'- uGCCUGCGagcgCGG--GUGCCGGCgACUg -3'
miRNA:   3'- gCGGACGCg---GCCuaCAUGGCCG-UGAa -5'
14412 5' -59.8 NC_003521.1 + 177768 0.69 0.652475
Target:  5'- uGCCcgugGCGCCcaaGAUGUACUGGgGCUg -3'
miRNA:   3'- gCGGa---CGCGGc--CUACAUGGCCgUGAa -5'
14412 5' -59.8 NC_003521.1 + 121048 0.77 0.255395
Target:  5'- uCGCCgcUGCGCCGGucccagGUGUGCUGGUACUc -3'
miRNA:   3'- -GCGG--ACGCGGCC------UACAUGGCCGUGAa -5'
14412 5' -59.8 NC_003521.1 + 85223 0.75 0.326394
Target:  5'- gCGCC-GCGCCGGAcagagacaUGggGCCGGCGCg- -3'
miRNA:   3'- -GCGGaCGCGGCCU--------ACa-UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 91105 0.75 0.3632
Target:  5'- gCGCCUGCGCCGGucgGggauuccCCGGCAUc- -3'
miRNA:   3'- -GCGGACGCGGCCua-Cau-----GGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 147841 0.71 0.536133
Target:  5'- uGCCgUGCaGCCGGggGUGCaGGCGCg- -3'
miRNA:   3'- gCGG-ACG-CGGCCuaCAUGgCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 118246 0.7 0.601647
Target:  5'- uGCCUcGUGUCGGGUGgaucacgcgguaGCCGGCACc- -3'
miRNA:   3'- gCGGA-CGCGGCCUACa-----------UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 209748 0.7 0.603598
Target:  5'- aGCCacgGCaGCCGGA-GUACCGGCugGCa- -3'
miRNA:   3'- gCGGa--CG-CGGCCUaCAUGGCCG--UGaa -5'
14412 5' -59.8 NC_003521.1 + 211388 0.7 0.632919
Target:  5'- gGCCgucagGCGCCGGcucucGUGcagcaGCCGGCGCa- -3'
miRNA:   3'- gCGGa----CGCGGCC-----UACa----UGGCCGUGaa -5'
14412 5' -59.8 NC_003521.1 + 115377 0.69 0.652475
Target:  5'- gGCCaGgGCCGGcAUGUGCagGGCGCg- -3'
miRNA:   3'- gCGGaCgCGGCC-UACAUGg-CCGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.