miRNA display CGI


Results 21 - 40 of 592 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 3' -54.7 NC_003521.1 + 36805 0.66 0.987988
Target:  5'- aGCCGcuCGcgGACGGCggacucgGGCAugAGCu- -3'
miRNA:   3'- -CGGCu-GCuaCUGCUG-------CCGUugUCGcc -5'
14422 3' -54.7 NC_003521.1 + 205760 0.66 0.987988
Target:  5'- cCCGGaggaagaccugugUGGUGGCGccgcACGGCAugAGCGu -3'
miRNA:   3'- cGGCU-------------GCUACUGC----UGCCGUugUCGCc -5'
14422 3' -54.7 NC_003521.1 + 223990 0.66 0.987988
Target:  5'- cGCCGGCGAgGACGGuCGGUccucaucGAUcuCGGa -3'
miRNA:   3'- -CGGCUGCUaCUGCU-GCCG-------UUGucGCC- -5'
14422 3' -54.7 NC_003521.1 + 167718 0.66 0.987701
Target:  5'- uCCGugGccacgguggauugcGUGGCGcuGCGGUGGcCGGCGGa -3'
miRNA:   3'- cGGCugC--------------UACUGC--UGCCGUU-GUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 239840 0.66 0.98681
Target:  5'- uGCCGugcucguuguCGGUGGCG-CGGaagcccauuccucuGCAGCGGa -3'
miRNA:   3'- -CGGCu---------GCUACUGCuGCCgu------------UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 88472 0.66 0.986657
Target:  5'- gGCUGcaGCGAguugaagaggGugGGCGGguAgAGCGGc -3'
miRNA:   3'- -CGGC--UGCUa---------CugCUGCCguUgUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 196572 0.66 0.986657
Target:  5'- uCCGGCG-UGACGcCGGacucccgcgcACGGCGGc -3'
miRNA:   3'- cGGCUGCuACUGCuGCCgu--------UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 16759 0.66 0.986657
Target:  5'- cGCCGGaggacgaggagGGUGACGAagagucccaggGGCGACGGCGc -3'
miRNA:   3'- -CGGCUg----------CUACUGCUg----------CCGUUGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 142272 0.66 0.986657
Target:  5'- cGCCGGaGAcGACGAUGGCu-CGGaGGa -3'
miRNA:   3'- -CGGCUgCUaCUGCUGCCGuuGUCgCC- -5'
14422 3' -54.7 NC_003521.1 + 95536 0.66 0.986657
Target:  5'- cCCGGCGA-GACGcCGGCGcGCgAGCuGGc -3'
miRNA:   3'- cGGCUGCUaCUGCuGCCGU-UG-UCG-CC- -5'
14422 3' -54.7 NC_003521.1 + 221984 0.66 0.986657
Target:  5'- cGCCGcacuCGuuguagGGCauguGCGGCGugGGCGGg -3'
miRNA:   3'- -CGGCu---GCua----CUGc---UGCCGUugUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 6193 0.66 0.986657
Target:  5'- --aGACGAucugcggcaagUGACuguGCGGCAugACGGCGGu -3'
miRNA:   3'- cggCUGCU-----------ACUGc--UGCCGU--UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 127870 0.66 0.986657
Target:  5'- uGCCcACcagGAUGcGCGGCGuGC-ACAGCGGc -3'
miRNA:   3'- -CGGcUG---CUAC-UGCUGC-CGuUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 89646 0.66 0.986657
Target:  5'- gGCCGAgGAgcAgGACGGC-ACAGaGGa -3'
miRNA:   3'- -CGGCUgCUacUgCUGCCGuUGUCgCC- -5'
14422 3' -54.7 NC_003521.1 + 210068 0.66 0.986657
Target:  5'- cCCGACcgGGUGAgGguACGGgGGCAGaCGGa -3'
miRNA:   3'- cGGCUG--CUACUgC--UGCCgUUGUC-GCC- -5'
14422 3' -54.7 NC_003521.1 + 50727 0.66 0.986657
Target:  5'- uGCauaGAgGcAUGuCGuCGGCGcaGCAGCGGg -3'
miRNA:   3'- -CGg--CUgC-UACuGCuGCCGU--UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 138875 0.66 0.986657
Target:  5'- -gCGugGAUcACGGCGGCcAC-GUGGa -3'
miRNA:   3'- cgGCugCUAcUGCUGCCGuUGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 18069 0.66 0.986502
Target:  5'- aCCGACGccGUGGCcguagcccaGACGGCgcgcgagAugAGCGGc -3'
miRNA:   3'- cGGCUGC--UACUG---------CUGCCG-------UugUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 97491 0.66 0.986502
Target:  5'- aGCCGccauCGGUGGCGGCugucucuaccgcgGGCGACcaCGGa -3'
miRNA:   3'- -CGGCu---GCUACUGCUG-------------CCGUUGucGCC- -5'
14422 3' -54.7 NC_003521.1 + 198465 0.66 0.985708
Target:  5'- gGCUGGCGGUGuCGACaGGCuuuuugcuguaccguGAUgucaaaAGCGGg -3'
miRNA:   3'- -CGGCUGCUACuGCUG-CCG---------------UUG------UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.