miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 5' -53.9 NC_003521.1 + 100647 0.66 0.989869
Target:  5'- gGCCGUCc-CGCCG-CGUUGCGUCGGc -3'
miRNA:   3'- gUGGUAGuaGUGGUgGUAGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 91637 0.66 0.989869
Target:  5'- -uCC-UCGUgGCCGCCGguggcgacgCGCGCCGa -3'
miRNA:   3'- guGGuAGUAgUGGUGGUa--------GUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 5558 0.66 0.989869
Target:  5'- cCGCCAUCGUUguuCCGuCCGUCGCugucaucaccgGCCGu -3'
miRNA:   3'- -GUGGUAGUAGu--GGU-GGUAGUG-----------CGGCc -5'
14422 5' -53.9 NC_003521.1 + 114744 0.66 0.989869
Target:  5'- aCGCCGUgGggguggCGCgGCCAcaGCGCUGGa -3'
miRNA:   3'- -GUGGUAgUa-----GUGgUGGUagUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 57409 0.66 0.989869
Target:  5'- gCGCCGUgcgGUCGcCCACCGUCuCGCggaCGGg -3'
miRNA:   3'- -GUGGUAg--UAGU-GGUGGUAGuGCG---GCC- -5'
14422 5' -53.9 NC_003521.1 + 175605 0.66 0.989869
Target:  5'- gGCCAguaucuccugCGUCuCCuCCAgucgCAUGCCGGg -3'
miRNA:   3'- gUGGUa---------GUAGuGGuGGUa---GUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 69920 0.66 0.989869
Target:  5'- cUACCuGUCG-CGCCugCuUCgcgACGCCGGa -3'
miRNA:   3'- -GUGG-UAGUaGUGGugGuAG---UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 138889 0.66 0.989869
Target:  5'- gGCCA-CGUgGaccCCACCGgcgagUACGCCGGc -3'
miRNA:   3'- gUGGUaGUAgU---GGUGGUa----GUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 110625 0.66 0.989869
Target:  5'- gUACCG-CGggCAUCGgCAUCuCGCCGGg -3'
miRNA:   3'- -GUGGUaGUa-GUGGUgGUAGuGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 138049 0.66 0.989869
Target:  5'- gCGCCGUCAUCGCgCAgCcgC-UGCCGc -3'
miRNA:   3'- -GUGGUAGUAGUG-GUgGuaGuGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 167801 0.66 0.989869
Target:  5'- -uCCGUCAgccagCACCACCGcgCAUGUCa- -3'
miRNA:   3'- guGGUAGUa----GUGGUGGUa-GUGCGGcc -5'
14422 5' -53.9 NC_003521.1 + 22028 0.66 0.989869
Target:  5'- aCACC--CGUCAcCCACCcagaaGUCAgaGCCGGa -3'
miRNA:   3'- -GUGGuaGUAGU-GGUGG-----UAGUg-CGGCC- -5'
14422 5' -53.9 NC_003521.1 + 28517 0.66 0.989869
Target:  5'- gAgUAUCAaCGCCugCGUgccCAUGCCGGc -3'
miRNA:   3'- gUgGUAGUaGUGGugGUA---GUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 98876 0.66 0.989869
Target:  5'- cCGCCGcUCGUgcuagggggCGCCGUCGUCGCGgCGGa -3'
miRNA:   3'- -GUGGU-AGUA---------GUGGUGGUAGUGCgGCC- -5'
14422 5' -53.9 NC_003521.1 + 195651 0.66 0.989869
Target:  5'- gGCCAgggagUcgCACCACCAcUUACGCgugCGGu -3'
miRNA:   3'- gUGGUa----GuaGUGGUGGU-AGUGCG---GCC- -5'
14422 5' -53.9 NC_003521.1 + 67357 0.66 0.989869
Target:  5'- gGCCGguaUCGaCGCCACUA-C-CGCCGGu -3'
miRNA:   3'- gUGGU---AGUaGUGGUGGUaGuGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 210370 0.66 0.989869
Target:  5'- uGCgCGUCAUCGgCACCcUCGgcCGCCuGGa -3'
miRNA:   3'- gUG-GUAGUAGUgGUGGuAGU--GCGG-CC- -5'
14422 5' -53.9 NC_003521.1 + 186726 0.66 0.989742
Target:  5'- uCACCuAUCGaCGCCggcucgauguagaACCgGUUGCGCCGGa -3'
miRNA:   3'- -GUGG-UAGUaGUGG-------------UGG-UAGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 204212 0.66 0.989742
Target:  5'- gCACCAcaagucgugcgagUCGUCgGCCACCcgC-CGCCaGGc -3'
miRNA:   3'- -GUGGU-------------AGUAG-UGGUGGuaGuGCGG-CC- -5'
14422 5' -53.9 NC_003521.1 + 48362 0.66 0.989614
Target:  5'- cCGCCGUCcuggaaaccggCGCCGCCGcCAUGCCc- -3'
miRNA:   3'- -GUGGUAGua---------GUGGUGGUaGUGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.