miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14423 3' -56.7 NC_003521.1 + 179157 0.66 0.929568
Target:  5'- gAGCCGCaCGCUGaaUUCCagCAuGCGGUAg -3'
miRNA:   3'- gUCGGCG-GCGAC--AAGGa-GU-UGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 12202 0.66 0.92645
Target:  5'- -uGCgCGCCGCgggGUucUCCUCAcuggagucggguucgACGGCAg -3'
miRNA:   3'- guCG-GCGGCGa--CA--AGGAGU---------------UGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 142364 0.66 0.924325
Target:  5'- gCGGCCGCCGCcGccUCCUcCAACguAGCc- -3'
miRNA:   3'- -GUCGGCGGCGaCa-AGGA-GUUG--UCGua -5'
14423 3' -56.7 NC_003521.1 + 196394 0.66 0.924325
Target:  5'- gAGCCGCCGUcacgaUGggCgggCAGCGGCAc -3'
miRNA:   3'- gUCGGCGGCG-----ACaaGga-GUUGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 43283 0.66 0.924325
Target:  5'- -cGCCGCCGCUcucGUccgccgacUCCUCGACAa--- -3'
miRNA:   3'- guCGGCGGCGA---CA--------AGGAGUUGUcgua -5'
14423 3' -56.7 NC_003521.1 + 104773 0.66 0.924325
Target:  5'- gCAGCCGCUGCccaggUCCaCAGguGCGUg -3'
miRNA:   3'- -GUCGGCGGCGaca--AGGaGUUguCGUA- -5'
14423 3' -56.7 NC_003521.1 + 208923 0.66 0.924325
Target:  5'- -uGCCuGCCGCaGUUCCUguGCcGCGg -3'
miRNA:   3'- guCGG-CGGCGaCAAGGAguUGuCGUa -5'
14423 3' -56.7 NC_003521.1 + 169423 0.66 0.924325
Target:  5'- gGGCCGCCGCc--UCgCUCAcgcggacgACGGCGUc -3'
miRNA:   3'- gUCGGCGGCGacaAG-GAGU--------UGUCGUA- -5'
14423 3' -56.7 NC_003521.1 + 5551 0.66 0.922707
Target:  5'- gCGGCCGCCGCcaucguUGUUCCguccgucgcugucaUCAcCGGCc- -3'
miRNA:   3'- -GUCGGCGGCG------ACAAGG--------------AGUuGUCGua -5'
14423 3' -56.7 NC_003521.1 + 72246 0.66 0.922163
Target:  5'- -uGCCGCCGCUGggucagccgccaCCUUAcccGCAGCc- -3'
miRNA:   3'- guCGGCGGCGACaa----------GGAGU---UGUCGua -5'
14423 3' -56.7 NC_003521.1 + 101902 0.66 0.91885
Target:  5'- gCAGCCGCCGUgg-UCCgacacCGAgcCGGCGUa -3'
miRNA:   3'- -GUCGGCGGCGacaAGGa----GUU--GUCGUA- -5'
14423 3' -56.7 NC_003521.1 + 59371 0.66 0.91885
Target:  5'- -cGCCaGCCGCUGgacgCCgc-GCAGCAc -3'
miRNA:   3'- guCGG-CGGCGACaa--GGaguUGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 112933 0.66 0.918289
Target:  5'- aCAGCgagacggUGCCGCUGUgcacgccgcgcaUCCUgGugGGCAa -3'
miRNA:   3'- -GUCG-------GCGGCGACA------------AGGAgUugUCGUa -5'
14423 3' -56.7 NC_003521.1 + 169419 0.66 0.917727
Target:  5'- cCAGCaCGCCGUaGgccagcaggcggUCCUCgAACAGCGg -3'
miRNA:   3'- -GUCG-GCGGCGaCa-----------AGGAG-UUGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 17477 0.66 0.917161
Target:  5'- aGGCCGCCGCcGaggCCUggggcaccuaucugCGGCAGCGc -3'
miRNA:   3'- gUCGGCGGCGaCaa-GGA--------------GUUGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 156883 0.66 0.913142
Target:  5'- cCGGCgGCCGCUG--CC-CGAUGGCAc -3'
miRNA:   3'- -GUCGgCGGCGACaaGGaGUUGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 239321 0.66 0.913142
Target:  5'- uGGUCGuuGCUGUgugUCUCAugGCGGUGUa -3'
miRNA:   3'- gUCGGCggCGACAa--GGAGU--UGUCGUA- -5'
14423 3' -56.7 NC_003521.1 + 184035 0.66 0.907204
Target:  5'- -uGCCGUCGCgagcCCUCGcgcACAGCAg -3'
miRNA:   3'- guCGGCGGCGacaaGGAGU---UGUCGUa -5'
14423 3' -56.7 NC_003521.1 + 92039 0.66 0.907204
Target:  5'- gCAGCCGCgGC---UCCUCGGC-GCGa -3'
miRNA:   3'- -GUCGGCGgCGacaAGGAGUUGuCGUa -5'
14423 3' -56.7 NC_003521.1 + 182059 0.66 0.907204
Target:  5'- -cGCCGCCcugcagugGCUGgaCCUCAGCccGCAg -3'
miRNA:   3'- guCGGCGG--------CGACaaGGAGUUGu-CGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.