miRNA display CGI


Results 1 - 20 of 254 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14423 5' -56.5 NC_003521.1 + 117399 0.66 0.953437
Target:  5'- -cGCGCUGUGcuggcaccGGguGGAGGGCgGCa -3'
miRNA:   3'- acUGCGACAUc-------CCguCUUUCCGgCGg -5'
14423 5' -56.5 NC_003521.1 + 14108 0.66 0.953437
Target:  5'- gGACGCUGccugugucUGGGuccGCcGAAGGGCUGgCa -3'
miRNA:   3'- aCUGCGAC--------AUCC---CGuCUUUCCGGCgG- -5'
14423 5' -56.5 NC_003521.1 + 178058 0.66 0.953437
Target:  5'- ---gGCUGgUGGGGaCGGGAAGGUCGa- -3'
miRNA:   3'- acugCGAC-AUCCC-GUCUUUCCGGCgg -5'
14423 5' -56.5 NC_003521.1 + 162881 0.66 0.953437
Target:  5'- gGGCGCgc----GCAGguGGGCCGCUa -3'
miRNA:   3'- aCUGCGacauccCGUCuuUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 238381 0.66 0.953437
Target:  5'- gGGCGCggggaugaacgUGcAGGGCgucccAGcgGGGCCGCUc -3'
miRNA:   3'- aCUGCG-----------ACaUCCCG-----UCuuUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 169660 0.66 0.953437
Target:  5'- aGACGCcGaAGaGGCAGAGgAGGCaacaGCa -3'
miRNA:   3'- aCUGCGaCaUC-CCGUCUU-UCCGg---CGg -5'
14423 5' -56.5 NC_003521.1 + 66958 0.66 0.953437
Target:  5'- cUGGCGCUGc--GGCAGGacGAGcGCaGCCu -3'
miRNA:   3'- -ACUGCGACaucCCGUCU--UUC-CGgCGG- -5'
14423 5' -56.5 NC_003521.1 + 121895 0.66 0.953437
Target:  5'- gGGCucCUGgcUGGGGCAGAu-GGCCcgGCCc -3'
miRNA:   3'- aCUGc-GAC--AUCCCGUCUuuCCGG--CGG- -5'
14423 5' -56.5 NC_003521.1 + 135787 0.66 0.95305
Target:  5'- gUGGCGCUGcGGgaggaggagcagcGGCGGAggGAGGCgCGgCg -3'
miRNA:   3'- -ACUGCGACaUC-------------CCGUCU--UUCCG-GCgG- -5'
14423 5' -56.5 NC_003521.1 + 38448 0.66 0.949466
Target:  5'- uUGcUGCUGcUGGaGCAGGucGGCgGCCg -3'
miRNA:   3'- -ACuGCGAC-AUCcCGUCUuuCCGgCGG- -5'
14423 5' -56.5 NC_003521.1 + 143163 0.66 0.949466
Target:  5'- cGACGaucccGUGGGGguCGGAcccGGcGCCGCCg -3'
miRNA:   3'- aCUGCga---CAUCCC--GUCUu--UC-CGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 122513 0.66 0.949466
Target:  5'- -aACGCggcGgcGGGCAGGccGGCgGCg -3'
miRNA:   3'- acUGCGa--CauCCCGUCUuuCCGgCGg -5'
14423 5' -56.5 NC_003521.1 + 89730 0.66 0.949466
Target:  5'- aGACGUgGgcacgGGGGCGGuGAcGGCaGCCg -3'
miRNA:   3'- aCUGCGaCa----UCCCGUCuUU-CCGgCGG- -5'
14423 5' -56.5 NC_003521.1 + 129552 0.66 0.949466
Target:  5'- cGGCGCUGgcacGGCGGGcccgacgauGGCUGCUc -3'
miRNA:   3'- aCUGCGACauc-CCGUCUuu-------CCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 236670 0.66 0.949466
Target:  5'- ---gGCUGguccUGGGGaaGGGGAGaGCCGCCg -3'
miRNA:   3'- acugCGAC----AUCCCg-UCUUUC-CGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 218471 0.66 0.949466
Target:  5'- -cACGCcGUGGGcGCAGu--GGCC-CCg -3'
miRNA:   3'- acUGCGaCAUCC-CGUCuuuCCGGcGG- -5'
14423 5' -56.5 NC_003521.1 + 164742 0.66 0.949466
Target:  5'- -aGCGCgGgaggGGGGCAucGcGGUCGCCg -3'
miRNA:   3'- acUGCGaCa---UCCCGUcuUuCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 216126 0.66 0.949466
Target:  5'- cGGCGCggagGccGcGGCAGAggAAGGCCaCCu -3'
miRNA:   3'- aCUGCGa---CauC-CCGUCU--UUCCGGcGG- -5'
14423 5' -56.5 NC_003521.1 + 238675 0.66 0.949466
Target:  5'- uUGcUGCUGcUGGaGCAGGucGGCgGCCg -3'
miRNA:   3'- -ACuGCGAC-AUCcCGUCUuuCCGgCGG- -5'
14423 5' -56.5 NC_003521.1 + 148654 0.66 0.949466
Target:  5'- cGA-GCUc---GGCGGGGAuGGCCGCCa -3'
miRNA:   3'- aCUgCGAcaucCCGUCUUU-CCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.