miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14423 5' -56.5 NC_003521.1 + 216246 0.66 0.945276
Target:  5'- cGA-GCg--GGaGGUGGAcgagGAGGCCGCCg -3'
miRNA:   3'- aCUgCGacaUC-CCGUCU----UUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 238675 0.66 0.949466
Target:  5'- uUGcUGCUGcUGGaGCAGGucGGCgGCCg -3'
miRNA:   3'- -ACuGCGAC-AUCcCGUCUuuCCGgCGG- -5'
14423 5' -56.5 NC_003521.1 + 187824 0.66 0.949466
Target:  5'- cGugGCUGUugcgcAGGGCGuugcGGAcGGCCuuccucaccGCCu -3'
miRNA:   3'- aCugCGACA-----UCCCGU----CUUuCCGG---------CGG- -5'
14423 5' -56.5 NC_003521.1 + 118696 0.66 0.93137
Target:  5'- --cCGCUGguggAGGGCAGGcucaugggcgAGGGgCGCg -3'
miRNA:   3'- acuGCGACa---UCCCGUCU----------UUCCgGCGg -5'
14423 5' -56.5 NC_003521.1 + 129552 0.66 0.949466
Target:  5'- cGGCGCUGgcacGGCGGGcccgacgauGGCUGCUc -3'
miRNA:   3'- aCUGCGACauc-CCGUCUuu-------CCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 105892 0.66 0.93137
Target:  5'- aGAUGCcg-GGGGCGuGuacguAGGCCGCg -3'
miRNA:   3'- aCUGCGacaUCCCGU-Cuu---UCCGGCGg -5'
14423 5' -56.5 NC_003521.1 + 168984 0.66 0.940865
Target:  5'- cGACGCgcgucgGUcgcgGGaGGCGGGcgacGGGGCCGgCa -3'
miRNA:   3'- aCUGCGa-----CA----UC-CCGUCU----UUCCGGCgG- -5'
14423 5' -56.5 NC_003521.1 + 131105 0.66 0.940865
Target:  5'- gGACGgc--GGGGCGGcgcGGCUGCCg -3'
miRNA:   3'- aCUGCgacaUCCCGUCuuuCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 102853 0.66 0.940865
Target:  5'- gGGCGCccGUGGcGUAGGucuGGGCCGUg -3'
miRNA:   3'- aCUGCGa-CAUCcCGUCUu--UCCGGCGg -5'
14423 5' -56.5 NC_003521.1 + 46446 0.66 0.93623
Target:  5'- cGGgGCUGcgGGGGCuGGucGGCCucGUCg -3'
miRNA:   3'- aCUgCGACa-UCCCGuCUuuCCGG--CGG- -5'
14423 5' -56.5 NC_003521.1 + 52591 0.66 0.945276
Target:  5'- gGGCaGCUGgu-GGCccGAAAGGCCGgCa -3'
miRNA:   3'- aCUG-CGACaucCCGu-CUUUCCGGCgG- -5'
14423 5' -56.5 NC_003521.1 + 26311 0.66 0.940865
Target:  5'- -cGCGCUGUccgcgcuuccAGGGCcggcucuccaGGGGAGGCUuCCa -3'
miRNA:   3'- acUGCGACA----------UCCCG----------UCUUUCCGGcGG- -5'
14423 5' -56.5 NC_003521.1 + 162881 0.66 0.953437
Target:  5'- gGGCGCgc----GCAGguGGGCCGCUa -3'
miRNA:   3'- aCUGCGacauccCGUCuuUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 148654 0.66 0.949466
Target:  5'- cGA-GCUc---GGCGGGGAuGGCCGCCa -3'
miRNA:   3'- aCUgCGAcaucCCGUCUUU-CCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 100840 0.66 0.93137
Target:  5'- gGACGC---AGGGUcgguGAGAGGCUccgGCCg -3'
miRNA:   3'- aCUGCGacaUCCCGu---CUUUCCGG---CGG- -5'
14423 5' -56.5 NC_003521.1 + 73129 0.66 0.93623
Target:  5'- aGGUGCUGcacggcgGGGGCAGcggcggcGGcGCCGCCu -3'
miRNA:   3'- aCUGCGACa------UCCCGUCuu-----UC-CGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 56420 0.66 0.945276
Target:  5'- -aGCGCcgGUAcucGCGGucGAAGGCCGCCu -3'
miRNA:   3'- acUGCGa-CAUcc-CGUC--UUUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 78138 0.66 0.93137
Target:  5'- gGGCGCguUAGcGGCGGc--GGCCGCg -3'
miRNA:   3'- aCUGCGacAUC-CCGUCuuuCCGGCGg -5'
14423 5' -56.5 NC_003521.1 + 118182 0.66 0.940865
Target:  5'- cGACGCccgccGGCAaagucGGGGCCGCCg -3'
miRNA:   3'- aCUGCGacaucCCGUcu---UUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 84856 0.66 0.945276
Target:  5'- -aACGCagcaccGUAcGGUAG-AAGGCCGCCc -3'
miRNA:   3'- acUGCGa-----CAUcCCGUCuUUCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.