miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14423 5' -56.5 NC_003521.1 + 187824 0.66 0.949466
Target:  5'- cGugGCUGUugcgcAGGGCGuugcGGAcGGCCuuccucaccGCCu -3'
miRNA:   3'- aCugCGACA-----UCCCGU----CUUuCCGG---------CGG- -5'
14423 5' -56.5 NC_003521.1 + 143163 0.66 0.949466
Target:  5'- cGACGaucccGUGGGGguCGGAcccGGcGCCGCCg -3'
miRNA:   3'- aCUGCga---CAUCCC--GUCUu--UC-CGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 216246 0.66 0.945276
Target:  5'- cGA-GCg--GGaGGUGGAcgagGAGGCCGCCg -3'
miRNA:   3'- aCUgCGacaUC-CCGUCU----UUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 197324 0.66 0.945276
Target:  5'- aGGCGCUGa----CGGAuguuGGCCGCCg -3'
miRNA:   3'- aCUGCGACaucccGUCUuu--CCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 221327 0.66 0.945276
Target:  5'- cGACaGCUG-AGaGGaa-GAAGGCUGCCg -3'
miRNA:   3'- aCUG-CGACaUC-CCgucUUUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 56420 0.66 0.945276
Target:  5'- -aGCGCcgGUAcucGCGGucGAAGGCCGCCu -3'
miRNA:   3'- acUGCGa-CAUcc-CGUC--UUUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 190580 0.66 0.945276
Target:  5'- cGGCGUgaucgAGGGCgAGGAGuGGCC-CCg -3'
miRNA:   3'- aCUGCGaca--UCCCG-UCUUU-CCGGcGG- -5'
14423 5' -56.5 NC_003521.1 + 52591 0.66 0.945276
Target:  5'- gGGCaGCUGgu-GGCccGAAAGGCCGgCa -3'
miRNA:   3'- aCUG-CGACaucCCGu-CUUUCCGGCgG- -5'
14423 5' -56.5 NC_003521.1 + 99768 0.66 0.945276
Target:  5'- aGACGUUGUGGuGGUcGAGcAGGCCcgggguGUCa -3'
miRNA:   3'- aCUGCGACAUC-CCGuCUU-UCCGG------CGG- -5'
14423 5' -56.5 NC_003521.1 + 84856 0.66 0.945276
Target:  5'- -aACGCagcaccGUAcGGUAG-AAGGCCGCCc -3'
miRNA:   3'- acUGCGa-----CAUcCCGUCuUUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 84773 0.66 0.945276
Target:  5'- cGACGUUGUuGGcaccgccgaaGCAGAgggAGGGCaCGUCg -3'
miRNA:   3'- aCUGCGACAuCC----------CGUCU---UUCCG-GCGG- -5'
14423 5' -56.5 NC_003521.1 + 36406 0.66 0.943976
Target:  5'- cGGCaGCgc-GGGGCGuggauuucgcggucGGAGGGCCGCg -3'
miRNA:   3'- aCUG-CGacaUCCCGU--------------CUUUCCGGCGg -5'
14423 5' -56.5 NC_003521.1 + 216912 0.66 0.940865
Target:  5'- gGGCGCgGU--GGCAGcGGAGGCgGUCg -3'
miRNA:   3'- aCUGCGaCAucCCGUC-UUUCCGgCGG- -5'
14423 5' -56.5 NC_003521.1 + 131105 0.66 0.940865
Target:  5'- gGACGgc--GGGGCGGcgcGGCUGCCg -3'
miRNA:   3'- aCUGCgacaUCCCGUCuuuCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 113076 0.66 0.940865
Target:  5'- cGG-GCUacgAGGcGCAGAc-GGCCGCCg -3'
miRNA:   3'- aCUgCGAca-UCC-CGUCUuuCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 123526 0.66 0.940865
Target:  5'- --cCGUcGUGGGGCAGcguGAGGGgaGCCg -3'
miRNA:   3'- acuGCGaCAUCCCGUC---UUUCCggCGG- -5'
14423 5' -56.5 NC_003521.1 + 118182 0.66 0.940865
Target:  5'- cGACGCccgccGGCAaagucGGGGCCGCCg -3'
miRNA:   3'- aCUGCGacaucCCGUcu---UUCCGGCGG- -5'
14423 5' -56.5 NC_003521.1 + 29734 0.66 0.940865
Target:  5'- cGGCGCgacgGacaGGCAGGAAGGaUCGUCg -3'
miRNA:   3'- aCUGCGa---CaucCCGUCUUUCC-GGCGG- -5'
14423 5' -56.5 NC_003521.1 + 186656 0.66 0.940865
Target:  5'- -cGCGCgGcGGuGGCGGAGGcGGCgGCCu -3'
miRNA:   3'- acUGCGaCaUC-CCGUCUUU-CCGgCGG- -5'
14423 5' -56.5 NC_003521.1 + 92000 0.66 0.940865
Target:  5'- cGGC-Cg--AGGGCAGGc-GGUCGCCg -3'
miRNA:   3'- aCUGcGacaUCCCGUCUuuCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.