miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1443 5' -56.6 NC_001335.1 + 23283 0.66 0.637513
Target:  5'- cGUCaCUCGGGuGACCGAgUucGGAGuGCCc -3'
miRNA:   3'- -UAG-GAGCUC-CUGGCUgA--CCUCuUGGa -5'
1443 5' -56.6 NC_001335.1 + 28502 0.66 0.62651
Target:  5'- gGUCCUCG-GGACCGuagucGGAuGGCCg -3'
miRNA:   3'- -UAGGAGCuCCUGGCuga--CCUcUUGGa -5'
1443 5' -56.6 NC_001335.1 + 52291 0.66 0.59357
Target:  5'- -aCCggUCaAGGACCGACcccuagGGGGAACCc -3'
miRNA:   3'- uaGG--AGcUCCUGGCUGa-----CCUCUUGGa -5'
1443 5' -56.6 NC_001335.1 + 6332 0.67 0.550141
Target:  5'- gGUCCUCGAGGAugcccaucguguCCGAggcagcgacCUGGuGAAUCc -3'
miRNA:   3'- -UAGGAGCUCCU------------GGCU---------GACCuCUUGGa -5'
1443 5' -56.6 NC_001335.1 + 17147 0.67 0.539427
Target:  5'- cUCUgcaugagCGAcGGcagcAUCGGCUGGAGAGCCUg -3'
miRNA:   3'- uAGGa------GCU-CC----UGGCUGACCUCUUGGA- -5'
1443 5' -56.6 NC_001335.1 + 41799 0.67 0.528784
Target:  5'- -aCCagCGAGGACCGACacacccagUGGAGGcuCCg -3'
miRNA:   3'- uaGGa-GCUCCUGGCUG--------ACCUCUu-GGa -5'
1443 5' -56.6 NC_001335.1 + 13943 0.68 0.497351
Target:  5'- cUCCagUCGGGGGuCUGACcGGAGGAUCg -3'
miRNA:   3'- uAGG--AGCUCCU-GGCUGaCCUCUUGGa -5'
1443 5' -56.6 NC_001335.1 + 36022 0.69 0.405975
Target:  5'- -aCCUCGAGaGcCCGuacauccagaagacGCUGGAGAGCUUg -3'
miRNA:   3'- uaGGAGCUC-CuGGC--------------UGACCUCUUGGA- -5'
1443 5' -56.6 NC_001335.1 + 36180 0.71 0.314899
Target:  5'- -aCCUCGAccgccgauuGGACCGGgaGGAGuACCUa -3'
miRNA:   3'- uaGGAGCU---------CCUGGCUgaCCUCuUGGA- -5'
1443 5' -56.6 NC_001335.1 + 31590 0.79 0.104722
Target:  5'- -cCCUCGAGGACCGcuuccacgucgugGCUGGcGAGCCg -3'
miRNA:   3'- uaGGAGCUCCUGGC-------------UGACCuCUUGGa -5'
1443 5' -56.6 NC_001335.1 + 6267 1.05 0.001286
Target:  5'- cAUCCUCGAGGACCGACUGGAGAACCUc -3'
miRNA:   3'- -UAGGAGCUCCUGGCUGACCUCUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.