miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 3' -56.4 NC_003521.1 + 39150 0.67 0.894863
Target:  5'- uGCUGCCAccGGCgGCgCAGcUCgcGGCCCAg -3'
miRNA:   3'- -UGAUGGU--CCG-UG-GUCuAGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 39876 0.67 0.894863
Target:  5'- gGCgAUCGGGCGCCguacaGGGUgUUGGCCg- -3'
miRNA:   3'- -UGaUGGUCCGUGG-----UCUAgAACCGGgu -5'
14437 3' -56.4 NC_003521.1 + 211764 0.67 0.888283
Target:  5'- --cACCAGGaagGCCAGGUCguugagcgugUGGUCCGu -3'
miRNA:   3'- ugaUGGUCCg--UGGUCUAGa---------ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 16283 0.67 0.888283
Target:  5'- cCUGCUGGGCGCCguGGGUgcCUaccGGCCCGg -3'
miRNA:   3'- uGAUGGUCCGUGG--UCUA--GAa--CCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 205912 0.67 0.887613
Target:  5'- cGCUACCugcugcgcuucgaGGGCGCCuGcGUCUcgcugggcUGGCCCu -3'
miRNA:   3'- -UGAUGG-------------UCCGUGGuC-UAGA--------ACCGGGu -5'
14437 3' -56.4 NC_003521.1 + 151807 0.68 0.881486
Target:  5'- cACcGCCGuGGCGCCGGugg--GGCCCGc -3'
miRNA:   3'- -UGaUGGU-CCGUGGUCuagaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 137520 0.68 0.874475
Target:  5'- cCUGCUGGaGUACCGGcgCguggUGGCCUAc -3'
miRNA:   3'- uGAUGGUC-CGUGGUCuaGa---ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 28099 0.68 0.867255
Target:  5'- aGCcgAgCAGGCGCUcgcccaAGAUCgaGGCCCGa -3'
miRNA:   3'- -UGa-UgGUCCGUGG------UCUAGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 167648 0.68 0.867255
Target:  5'- uGCcgGCCAGcuccGCGCCAGGUCgcaGGCCgAg -3'
miRNA:   3'- -UGa-UGGUC----CGUGGUCUAGaa-CCGGgU- -5'
14437 3' -56.4 NC_003521.1 + 128992 0.68 0.866522
Target:  5'- -aUGCUGGGCACCacgcuccAGAUCUcgcUGGCgCCGc -3'
miRNA:   3'- ugAUGGUCCGUGG-------UCUAGA---ACCG-GGU- -5'
14437 3' -56.4 NC_003521.1 + 63962 0.68 0.859831
Target:  5'- aGCUGCUGGcGCggcgccauaACCAGAUCcUGGCCg- -3'
miRNA:   3'- -UGAUGGUC-CG---------UGGUCUAGaACCGGgu -5'
14437 3' -56.4 NC_003521.1 + 74397 0.68 0.844395
Target:  5'- cGCUGCCA--CGCCGGGUCU-GGCUCu -3'
miRNA:   3'- -UGAUGGUccGUGGUCUAGAaCCGGGu -5'
14437 3' -56.4 NC_003521.1 + 141482 0.68 0.844395
Target:  5'- cGCUucuCCGGGCGCgAGGUgcccaCcUGGCCCGc -3'
miRNA:   3'- -UGAu--GGUCCGUGgUCUA-----GaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 232522 0.68 0.844395
Target:  5'- cGCUGgacuUCGGGCGCCAGuuUCUgggcgaggUGGCCUAc -3'
miRNA:   3'- -UGAU----GGUCCGUGGUCu-AGA--------ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 87773 0.69 0.819864
Target:  5'- gGCgcagGCCAGG-GCCAGGUgCUgaGGCCCGu -3'
miRNA:   3'- -UGa---UGGUCCgUGGUCUA-GAa-CCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 139202 0.69 0.811348
Target:  5'- cGCUACCA-GCGCCGGGcCcUGGCCg- -3'
miRNA:   3'- -UGAUGGUcCGUGGUCUaGaACCGGgu -5'
14437 3' -56.4 NC_003521.1 + 61570 0.7 0.774881
Target:  5'- cGCUGCuggccggcgaguuCAGGCGCCAGAa---GGCCCGc -3'
miRNA:   3'- -UGAUG-------------GUCCGUGGUCUagaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 121616 0.7 0.747805
Target:  5'- uGCUGCCGGGCaagACCgagaAGAUCaagcGGCCCc -3'
miRNA:   3'- -UGAUGGUCCG---UGG----UCUAGaa--CCGGGu -5'
14437 3' -56.4 NC_003521.1 + 25654 0.71 0.718932
Target:  5'- --cAUCAGGCGgCAGAUCgugcUGGUCCAc -3'
miRNA:   3'- ugaUGGUCCGUgGUCUAGa---ACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 26273 0.72 0.639408
Target:  5'- cACcACCAGGCACCGGucUCgaGGCCa- -3'
miRNA:   3'- -UGaUGGUCCGUGGUCu-AGaaCCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.