Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14446 | 3' | -62 | NC_003521.1 | + | 221835 | 0.66 | 0.78605 |
Target: 5'- gUCuCCC-UCGUCGCGCG-GCGCGu- -3' miRNA: 3'- gGGcGGGcAGCAGCGCGCuCGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 102739 | 0.66 | 0.78605 |
Target: 5'- aCgUGCUgGUCGUUGgGCaGGUGCACGc -3' miRNA: 3'- -GgGCGGgCAGCAGCgCGcUCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 224721 | 0.66 | 0.78605 |
Target: 5'- uCCCGCCCGUgGugcUCGC-CGA-CGCAg- -3' miRNA: 3'- -GGGCGGGCAgC---AGCGcGCUcGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 212085 | 0.66 | 0.78605 |
Target: 5'- gCCCGCgcgcgucuggUUGUCGgCGUGCGccaccaucuGGCGCACGg -3' miRNA: 3'- -GGGCG----------GGCAGCaGCGCGC---------UCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 127851 | 0.66 | 0.785206 |
Target: 5'- gCCaGCCCGUCGggcaggUugcccaccaggauGCGCGGcGUGCACAg -3' miRNA: 3'- gGG-CGGGCAGCa-----G-------------CGCGCU-CGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 69966 | 0.66 | 0.780112 |
Target: 5'- gCCCGCCCccgcggaGaagccgacgcgcgucUCGUCGUgcagucccaGCGAGCGCAg- -3' miRNA: 3'- -GGGCGGG-------C---------------AGCAGCG---------CGCUCGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 109182 | 0.66 | 0.77755 |
Target: 5'- gCCGCCaCGauggGUCGCGUGGuGUGCAUg -3' miRNA: 3'- gGGCGG-GCag--CAGCGCGCU-CGCGUGu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 150752 | 0.66 | 0.77755 |
Target: 5'- gCUGCCCGgacUGcUC-CGCGAGCGCGuCGg -3' miRNA: 3'- gGGCGGGCa--GC-AGcGCGCUCGCGU-GU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 185074 | 0.66 | 0.77755 |
Target: 5'- gCCgCGCCUGUCGcUGcCGCccGCGCGCu -3' miRNA: 3'- -GG-GCGGGCAGCaGC-GCGcuCGCGUGu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 83124 | 0.66 | 0.768939 |
Target: 5'- uUCUGCUCGaucUCGaagacgaGCGCGuGCGCGCAu -3' miRNA: 3'- -GGGCGGGC---AGCag-----CGCGCuCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 196768 | 0.66 | 0.768939 |
Target: 5'- cCCCGgCCGgcgCGaC-CGCGGGCGCGg- -3' miRNA: 3'- -GGGCgGGCa--GCaGcGCGCUCGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 206702 | 0.66 | 0.768939 |
Target: 5'- aCCUcCCCGUCGcgauaCGUGCGGGCG-GCGg -3' miRNA: 3'- -GGGcGGGCAGCa----GCGCGCUCGCgUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 45052 | 0.66 | 0.768072 |
Target: 5'- gCCGCgCCGcUCGUgccaggcaaCGCGCGuccugcgugagguGGCGCAUAc -3' miRNA: 3'- gGGCG-GGC-AGCA---------GCGCGC-------------UCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 149574 | 0.67 | 0.760225 |
Target: 5'- uCCCGCCCGUgcccaucuaCGUgGUcaaCGGGCuGCACGc -3' miRNA: 3'- -GGGCGGGCA---------GCAgCGc--GCUCG-CGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 26008 | 0.67 | 0.760225 |
Target: 5'- aCCG-CCGUCGcCGCGCccGGCGCcCGa -3' miRNA: 3'- gGGCgGGCAGCaGCGCGc-UCGCGuGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 105193 | 0.67 | 0.760225 |
Target: 5'- cCCCGCCgauCGUgGgaucCGCccGCGAGCuGCGCGg -3' miRNA: 3'- -GGGCGG---GCAgCa---GCG--CGCUCG-CGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 106429 | 0.67 | 0.760225 |
Target: 5'- --aGUCCGU-GUCGCugGCGaAGCGCACGc -3' miRNA: 3'- gggCGGGCAgCAGCG--CGC-UCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 148600 | 0.67 | 0.759348 |
Target: 5'- gCCCGUCgGgcccucacagcgcUCGUCGCGCGGcCGgGCGg -3' miRNA: 3'- -GGGCGGgC-------------AGCAGCGCGCUcGCgUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 175847 | 0.67 | 0.751415 |
Target: 5'- -gCGCaCGUCGUCGUGCGAG-GuCACc -3' miRNA: 3'- ggGCGgGCAGCAGCGCGCUCgC-GUGu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 73561 | 0.67 | 0.751415 |
Target: 5'- aCCaCCUGgcCGUgGUGCGGGCGCugGu -3' miRNA: 3'- gGGcGGGCa-GCAgCGCGCUCGCGugU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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