miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 5' -52.6 NC_003521.1 + 59107 0.66 0.993754
Target:  5'- aGCGUGCGCGCguccaucaugucgaaGCGCacGGUGGAuuuGAa -3'
miRNA:   3'- cCGCGCGUGCG---------------CGCG--CCAUUUuuuCU- -5'
14446 5' -52.6 NC_003521.1 + 78885 0.66 0.993396
Target:  5'- aGGCGCGUcaggggguccACGCGgGCcucGUAGAcgGGGa -3'
miRNA:   3'- -CCGCGCG----------UGCGCgCGc--CAUUUuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 180227 0.66 0.993396
Target:  5'- uGGUGC-CGCGCGUGUGGg-------- -3'
miRNA:   3'- -CCGCGcGUGCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 183254 0.66 0.993396
Target:  5'- cGGCGCccucgaAgGCGCGCGaGgacGAGGAGGAu -3'
miRNA:   3'- -CCGCGcg----UgCGCGCGC-Ca--UUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 212078 0.66 0.993396
Target:  5'- uGGCGCGgccCGCGCGCGUcuGGUu------- -3'
miRNA:   3'- -CCGCGC---GUGCGCGCG--CCAuuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 181655 0.66 0.993396
Target:  5'- aGCgGgGCAUgGUGCGCGGgggagaucgGAGAGAGAc -3'
miRNA:   3'- cCG-CgCGUG-CGCGCGCCa--------UUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 117928 0.66 0.993396
Target:  5'- cGGUGCGCAgGaCGgG-GGaGGAGGAGAg -3'
miRNA:   3'- -CCGCGCGUgC-GCgCgCCaUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 240122 0.66 0.993396
Target:  5'- gGGCGUGCggucgucccgGCGgGCGCGG-AAAGc--- -3'
miRNA:   3'- -CCGCGCG----------UGCgCGCGCCaUUUUuucu -5'
14446 5' -52.6 NC_003521.1 + 166274 0.66 0.993396
Target:  5'- gGGCacGCGCACG-GCGCGGc-------- -3'
miRNA:   3'- -CCG--CGCGUGCgCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 225846 0.66 0.993396
Target:  5'- cGGCGCGCuCGUG-GUGGUGc------ -3'
miRNA:   3'- -CCGCGCGuGCGCgCGCCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 154028 0.66 0.993396
Target:  5'- cGGuCGCgGUACGUaCGCGGUGGugcccauGGAGAu -3'
miRNA:   3'- -CC-GCG-CGUGCGcGCGCCAUUu------UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 89252 0.66 0.99283
Target:  5'- gGGCGUGCugACGCGgugacacgagacgccCGCGcGUcAGAGGGAa -3'
miRNA:   3'- -CCGCGCG--UGCGC---------------GCGC-CAuUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 18987 0.66 0.992432
Target:  5'- aGGaCGCGC-CGCGCGac--GAGGGAGAc -3'
miRNA:   3'- -CC-GCGCGuGCGCGCgccaUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 81643 0.66 0.992432
Target:  5'- cGGCGCGgAUG-GUGCGGUcuGAAc-- -3'
miRNA:   3'- -CCGCGCgUGCgCGCGCCAuuUUUucu -5'
14446 5' -52.6 NC_003521.1 + 70364 0.66 0.992432
Target:  5'- cGGCGggguagagcCGCAgGCG-GCGGUAGAGGu-- -3'
miRNA:   3'- -CCGC---------GCGUgCGCgCGCCAUUUUUucu -5'
14446 5' -52.6 NC_003521.1 + 127086 0.66 0.992432
Target:  5'- aGC-CGCcagcaggaACGuCGgGCGGUAGAAGAGGu -3'
miRNA:   3'- cCGcGCG--------UGC-GCgCGCCAUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 56807 0.66 0.992432
Target:  5'- cGGCGuCGCGCGCGaacgaGuCGGccgauaUGAGGAAGu -3'
miRNA:   3'- -CCGC-GCGUGCGCg----C-GCC------AUUUUUUCu -5'
14446 5' -52.6 NC_003521.1 + 198714 0.67 0.991358
Target:  5'- -cCGCGUuugACGCGCGCGGg-------- -3'
miRNA:   3'- ccGCGCG---UGCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 49891 0.67 0.991358
Target:  5'- uGGCGUGCGUGUGgCGaCGGcagccaucuUAGAAGAGAc -3'
miRNA:   3'- -CCGCGCGUGCGC-GC-GCC---------AUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 91457 0.67 0.991358
Target:  5'- uGCGCGCauACGCGCGCagcucgcgGGUGuaugcguggguGGGGGAu -3'
miRNA:   3'- cCGCGCG--UGCGCGCG--------CCAUu----------UUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.