miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14447 5' -53.3 NC_003521.1 + 114926 0.66 0.993449
Target:  5'- gCCGgGCCUCGUgcAUGCUGgGcgUGGAc -3'
miRNA:   3'- -GGUgCGGGGCA--UAUGGCaCuaACCUa -5'
14447 5' -53.3 NC_003521.1 + 235196 0.66 0.993449
Target:  5'- cCCACGCCCUGUGgugcgACUGcGAcgagUGGc- -3'
miRNA:   3'- -GGUGCGGGGCAUa----UGGCaCUa---ACCua -5'
14447 5' -53.3 NC_003521.1 + 225980 0.66 0.993449
Target:  5'- gCCACGCgCCGcacguaGUGGUUGGGg -3'
miRNA:   3'- -GGUGCGgGGCauauggCACUAACCUa -5'
14447 5' -53.3 NC_003521.1 + 152572 0.66 0.991435
Target:  5'- aCGCGCUCC----ACCGUGuaGUUGGAg -3'
miRNA:   3'- gGUGCGGGGcauaUGGCAC--UAACCUa -5'
14447 5' -53.3 NC_003521.1 + 127754 0.66 0.988961
Target:  5'- uCUGCGCCUCGUAgcCCGgaaGGUgcUGGAg -3'
miRNA:   3'- -GGUGCGGGGCAUauGGCa--CUA--ACCUa -5'
14447 5' -53.3 NC_003521.1 + 211936 0.66 0.988961
Target:  5'- -aGCGUCUCGUAgaccuCCGUGAgcUUGGGc -3'
miRNA:   3'- ggUGCGGGGCAUau---GGCACU--AACCUa -5'
14447 5' -53.3 NC_003521.1 + 20962 0.66 0.987531
Target:  5'- aCCACGCCgUCGUcgAUACCGUccgGAcaUGGAg -3'
miRNA:   3'- -GGUGCGG-GGCA--UAUGGCA---CUa-ACCUa -5'
14447 5' -53.3 NC_003521.1 + 26950 0.66 0.987531
Target:  5'- uCCGCGCCCgGcggGUACgucaGUGGUaGGAg -3'
miRNA:   3'- -GGUGCGGGgCa--UAUGg---CACUAaCCUa -5'
14447 5' -53.3 NC_003521.1 + 177896 0.66 0.987531
Target:  5'- cCCGCGCCCCGUAaACUGUu------- -3'
miRNA:   3'- -GGUGCGGGGCAUaUGGCAcuaaccua -5'
14447 5' -53.3 NC_003521.1 + 94463 0.66 0.987531
Target:  5'- cCCGgaacCGCCCCGUGUacggcGCgGUGAUgccuccGGAUc -3'
miRNA:   3'- -GGU----GCGGGGCAUA-----UGgCACUAa-----CCUA- -5'
14447 5' -53.3 NC_003521.1 + 155225 0.67 0.984247
Target:  5'- uUCGCGCCCUcgGUGgaguCCGUGGUgguggUGGGg -3'
miRNA:   3'- -GGUGCGGGG--CAUau--GGCACUA-----ACCUa -5'
14447 5' -53.3 NC_003521.1 + 182251 0.68 0.970447
Target:  5'- gCAUGUCUCGcuaGCCGUGAUUGGc- -3'
miRNA:   3'- gGUGCGGGGCauaUGGCACUAACCua -5'
14447 5' -53.3 NC_003521.1 + 119829 0.68 0.967496
Target:  5'- gCACGCCCCaGUGguagGCgGUGcgUcGGAUa -3'
miRNA:   3'- gGUGCGGGG-CAUa---UGgCACuaA-CCUA- -5'
14447 5' -53.3 NC_003521.1 + 34404 0.69 0.942709
Target:  5'- aCCACGCCCCGUuggaaaGUcCCGUGugaaauccccgucUGGAa -3'
miRNA:   3'- -GGUGCGGGGCA------UAuGGCACua-----------ACCUa -5'
14447 5' -53.3 NC_003521.1 + 70983 0.7 0.936201
Target:  5'- gCCAgGCCCUGU---CCGUGGUgGGAc -3'
miRNA:   3'- -GGUgCGGGGCAuauGGCACUAaCCUa -5'
14447 5' -53.3 NC_003521.1 + 102790 0.7 0.931275
Target:  5'- cCCACGCCCCGUGcGCCGg-------- -3'
miRNA:   3'- -GGUGCGGGGCAUaUGGCacuaaccua -5'
14447 5' -53.3 NC_003521.1 + 47971 0.7 0.920728
Target:  5'- cCCAUGaCUCCGUGUcguuccaaaccGCCGUGAcguugUUGGAa -3'
miRNA:   3'- -GGUGC-GGGGCAUA-----------UGGCACU-----AACCUa -5'
14447 5' -53.3 NC_003521.1 + 173900 0.73 0.796289
Target:  5'- aCCACGUUgCCGUAgccgGCCGUGAacUGGAUg -3'
miRNA:   3'- -GGUGCGG-GGCAUa---UGGCACUa-ACCUA- -5'
14447 5' -53.3 NC_003521.1 + 90178 1.08 0.01052
Target:  5'- aCCACGCCCCGUAUACCGUGAUUGGAUu -3'
miRNA:   3'- -GGUGCGGGGCAUAUGGCACUAACCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.