miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14448 5' -49.3 NC_003521.1 + 66623 0.66 0.999826
Target:  5'- ----cGCGACCCcAACgUGGGcGCGUc -3'
miRNA:   3'- ugauaUGCUGGGaUUGgAUCCaUGCA- -5'
14448 5' -49.3 NC_003521.1 + 129674 0.66 0.99972
Target:  5'- cGCUAUGCGGaccguCCCgUGGCCccagcGGUACGa -3'
miRNA:   3'- -UGAUAUGCU-----GGG-AUUGGau---CCAUGCa -5'
14448 5' -49.3 NC_003521.1 + 64083 0.66 0.999649
Target:  5'- uCUGUGCGAgCCcGGCCUGGagGCGg -3'
miRNA:   3'- uGAUAUGCUgGGaUUGGAUCcaUGCa -5'
14448 5' -49.3 NC_003521.1 + 116506 0.67 0.999329
Target:  5'- ----gACGGCCuCUucuGCCUGGGUuGCGUc -3'
miRNA:   3'- ugauaUGCUGG-GAu--UGGAUCCA-UGCA- -5'
14448 5' -49.3 NC_003521.1 + 148819 0.67 0.999329
Target:  5'- --cGUGCGcggcgaccgccuGCCCUcGGCCgAGGUGCGUg -3'
miRNA:   3'- ugaUAUGC------------UGGGA-UUGGaUCCAUGCA- -5'
14448 5' -49.3 NC_003521.1 + 229782 0.67 0.998783
Target:  5'- aGCUGUACGAUuauaCCagAACgUGGGUAUGg -3'
miRNA:   3'- -UGAUAUGCUG----GGa-UUGgAUCCAUGCa -5'
14448 5' -49.3 NC_003521.1 + 173317 0.67 0.998783
Target:  5'- uGCUcaGCGACaCCUGggGCCacaGGGUGCGg -3'
miRNA:   3'- -UGAuaUGCUG-GGAU--UGGa--UCCAUGCa -5'
14448 5' -49.3 NC_003521.1 + 102909 0.68 0.997048
Target:  5'- ----cGCGACCCgccAGCCacGGGUACGg -3'
miRNA:   3'- ugauaUGCUGGGa--UUGGa-UCCAUGCa -5'
14448 5' -49.3 NC_003521.1 + 90707 0.7 0.992666
Target:  5'- -aUAUAC-ACCCUGAucCCUAGGUACc- -3'
miRNA:   3'- ugAUAUGcUGGGAUU--GGAUCCAUGca -5'
14448 5' -49.3 NC_003521.1 + 44363 0.7 0.992666
Target:  5'- cGCUGgggcUGCGGCCCacgcccgaGGCCgAGGUGCGUu -3'
miRNA:   3'- -UGAU----AUGCUGGGa-------UUGGaUCCAUGCA- -5'
14448 5' -49.3 NC_003521.1 + 25258 0.72 0.975355
Target:  5'- gACggcGCGGuCCCUGGCCUGGGUguaccaguuucGCGUg -3'
miRNA:   3'- -UGauaUGCU-GGGAUUGGAUCCA-----------UGCA- -5'
14448 5' -49.3 NC_003521.1 + 90373 1.08 0.021785
Target:  5'- aACUAUACGACCCUAACCUAGGUACGUa -3'
miRNA:   3'- -UGAUAUGCUGGGAUUGGAUCCAUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.