Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14449 | 3' | -58.6 | NC_003521.1 | + | 148345 | 0.66 | 0.908991 |
Target: 5'- gCCCGGAGaGGcugggagacccccgaGCGGgcaaGCCgagcgGGGUGCGg -3' miRNA: 3'- -GGGCCUC-CC---------------CGCCa---UGGa----UCCAUGUg -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 86995 | 0.66 | 0.906676 |
Target: 5'- --aGGAGGcGGCGGUGaugAGGgcCACg -3' miRNA: 3'- gggCCUCC-CCGCCAUggaUCCauGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 93973 | 0.66 | 0.906676 |
Target: 5'- gCgGGAGGGGCGGagGCg-AGGacgagGCGCc -3' miRNA: 3'- gGgCCUCCCCGCCa-UGgaUCCa----UGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 151466 | 0.66 | 0.906676 |
Target: 5'- gUCGGugucuGGGGCaugugcGUGCUUGGGUGCGa -3' miRNA: 3'- gGGCCu----CCCCGc-----CAUGGAUCCAUGUg -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 175442 | 0.66 | 0.900742 |
Target: 5'- gCUGGAGGGGCccucAUCaGGGUugGCa -3' miRNA: 3'- gGGCCUCCCCGcca-UGGaUCCAugUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 46264 | 0.66 | 0.900742 |
Target: 5'- cCUCGGu--GGCGGUAgCgcagAGGUGCAUg -3' miRNA: 3'- -GGGCCuccCCGCCAUgGa---UCCAUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 150535 | 0.66 | 0.898921 |
Target: 5'- aCCGGgguacccccccuacGGGGGC-GUACCUAG-UAUGCa -3' miRNA: 3'- gGGCC--------------UCCCCGcCAUGGAUCcAUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 137037 | 0.66 | 0.8946 |
Target: 5'- gCCGGAGcacGGCGGcg---AGGUGCGCg -3' miRNA: 3'- gGGCCUCc--CCGCCauggaUCCAUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 23 | 0.66 | 0.892085 |
Target: 5'- uCCCGG-GGGGUGGggggguguuuuugGCggGGGgGCACu -3' miRNA: 3'- -GGGCCuCCCCGCCa------------UGgaUCCaUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 240572 | 0.66 | 0.892085 |
Target: 5'- uCCCGG-GGGGUGGggggguguuuuugGCggGGGgGCACu -3' miRNA: 3'- -GGGCCuCCCCGCCa------------UGgaUCCaUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 40345 | 0.66 | 0.892085 |
Target: 5'- uCCCGG-GGGGUGGggggguguuuuugGCggGGGgGCACu -3' miRNA: 3'- -GGGCCuCCCCGCCa------------UGgaUCCaUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 101117 | 0.67 | 0.881702 |
Target: 5'- cCCCGcgaGGGGGGCGGgucgGC--GGGcACGCg -3' miRNA: 3'- -GGGC---CUCCCCGCCa---UGgaUCCaUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 155827 | 0.67 | 0.881702 |
Target: 5'- aUCCGGAGGuGGUGGcGCagaaccGUACGCa -3' miRNA: 3'- -GGGCCUCC-CCGCCaUGgauc--CAUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 117413 | 0.67 | 0.881702 |
Target: 5'- aCCGGguGGaGGGCGGcAUCUcGGGUccGCGCg -3' miRNA: 3'- gGGCC--UC-CCCGCCaUGGA-UCCA--UGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 146363 | 0.67 | 0.881702 |
Target: 5'- gCCGuacacGGGGCGGUuCC-GGGUACAg -3' miRNA: 3'- gGGCcu---CCCCGCCAuGGaUCCAUGUg -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 101814 | 0.67 | 0.86801 |
Target: 5'- gCCCaG-GGGGCGGUcgcgguagGCCUcGG-GCACg -3' miRNA: 3'- -GGGcCuCCCCGCCA--------UGGAuCCaUGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 207337 | 0.67 | 0.86801 |
Target: 5'- uUCGG-GGGGCGcGUcCCUcGGGUcgGCGCg -3' miRNA: 3'- gGGCCuCCCCGC-CAuGGA-UCCA--UGUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 172569 | 0.67 | 0.860876 |
Target: 5'- uCCCGGGGucGGCGGUcgcACCgccAGGUGaACg -3' miRNA: 3'- -GGGCCUCc-CCGCCA---UGGa--UCCAUgUG- -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 173413 | 0.67 | 0.860876 |
Target: 5'- aCCCguGGAgGGGGCGcUGCUgguGGUGCAa -3' miRNA: 3'- -GGG--CCU-CCCCGCcAUGGau-CCAUGUg -5' |
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14449 | 3' | -58.6 | NC_003521.1 | + | 131101 | 0.67 | 0.853558 |
Target: 5'- cUCCGGAcggcGGGGCGGcgcggcUGCCgggaAGGgacaGCGCg -3' miRNA: 3'- -GGGCCU----CCCCGCC------AUGGa---UCCa---UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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