miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14449 3' -58.6 NC_003521.1 + 90634 1.1 0.002652
Target:  5'- cCCCGGAGGGGCGGUACCUAGGUACACc -3'
miRNA:   3'- -GGGCCUCCCCGCCAUGGAUCCAUGUG- -5'
14449 3' -58.6 NC_003521.1 + 207337 0.67 0.86801
Target:  5'- uUCGG-GGGGCGcGUcCCUcGGGUcgGCGCg -3'
miRNA:   3'- gGGCCuCCCCGC-CAuGGA-UCCA--UGUG- -5'
14449 3' -58.6 NC_003521.1 + 101814 0.67 0.86801
Target:  5'- gCCCaG-GGGGCGGUcgcgguagGCCUcGG-GCACg -3'
miRNA:   3'- -GGGcCuCCCCGCCA--------UGGAuCCaUGUG- -5'
14449 3' -58.6 NC_003521.1 + 101117 0.67 0.881702
Target:  5'- cCCCGcgaGGGGGGCGGgucgGC--GGGcACGCg -3'
miRNA:   3'- -GGGC---CUCCCCGCCa---UGgaUCCaUGUG- -5'
14449 3' -58.6 NC_003521.1 + 23 0.66 0.892085
Target:  5'- uCCCGG-GGGGUGGggggguguuuuugGCggGGGgGCACu -3'
miRNA:   3'- -GGGCCuCCCCGCCa------------UGgaUCCaUGUG- -5'
14449 3' -58.6 NC_003521.1 + 240572 0.66 0.892085
Target:  5'- uCCCGG-GGGGUGGggggguguuuuugGCggGGGgGCACu -3'
miRNA:   3'- -GGGCCuCCCCGCCa------------UGgaUCCaUGUG- -5'
14449 3' -58.6 NC_003521.1 + 175442 0.66 0.900742
Target:  5'- gCUGGAGGGGCccucAUCaGGGUugGCa -3'
miRNA:   3'- gGGCCUCCCCGcca-UGGaUCCAugUG- -5'
14449 3' -58.6 NC_003521.1 + 46264 0.66 0.900742
Target:  5'- cCUCGGu--GGCGGUAgCgcagAGGUGCAUg -3'
miRNA:   3'- -GGGCCuccCCGCCAUgGa---UCCAUGUG- -5'
14449 3' -58.6 NC_003521.1 + 86995 0.66 0.906676
Target:  5'- --aGGAGGcGGCGGUGaugAGGgcCACg -3'
miRNA:   3'- gggCCUCC-CCGCCAUggaUCCauGUG- -5'
14449 3' -58.6 NC_003521.1 + 173413 0.67 0.860876
Target:  5'- aCCCguGGAgGGGGCGcUGCUgguGGUGCAa -3'
miRNA:   3'- -GGG--CCU-CCCCGCcAUGGau-CCAUGUg -5'
14449 3' -58.6 NC_003521.1 + 131101 0.67 0.853558
Target:  5'- cUCCGGAcggcGGGGCGGcgcggcUGCCgggaAGGgacaGCGCg -3'
miRNA:   3'- -GGGCCU----CCCCGCC------AUGGa---UCCa---UGUG- -5'
14449 3' -58.6 NC_003521.1 + 118679 0.73 0.55318
Target:  5'- uUCgGGAGGcGGCGGUACCgcuGGUGgAg -3'
miRNA:   3'- -GGgCCUCC-CCGCCAUGGau-CCAUgUg -5'
14449 3' -58.6 NC_003521.1 + 170184 0.72 0.591432
Target:  5'- uUCGGAGcGGUGGUGCCgguggAGGUagugGCACg -3'
miRNA:   3'- gGGCCUCcCCGCCAUGGa----UCCA----UGUG- -5'
14449 3' -58.6 NC_003521.1 + 90094 0.7 0.707057
Target:  5'- gCgCGGuaaaaaAGaaGCGGUGCCUAGGUACGCc -3'
miRNA:   3'- -GgGCC------UCccCGCCAUGGAUCCAUGUG- -5'
14449 3' -58.6 NC_003521.1 + 90291 0.7 0.716499
Target:  5'- cCCCGuAGGGGgGGUACCccGGUAagaaaACu -3'
miRNA:   3'- -GGGCcUCCCCgCCAUGGauCCAUg----UG- -5'
14449 3' -58.6 NC_003521.1 + 91575 0.69 0.762586
Target:  5'- gCCCacaAGGGGCGGUGugUGGGU-CACg -3'
miRNA:   3'- -GGGcc-UCCCCGCCAUggAUCCAuGUG- -5'
14449 3' -58.6 NC_003521.1 + 112192 0.69 0.78035
Target:  5'- aUCUGGAGGGGCGcGUGuCCgaagcGGagGCGCu -3'
miRNA:   3'- -GGGCCUCCCCGC-CAU-GGau---CCa-UGUG- -5'
14449 3' -58.6 NC_003521.1 + 92080 0.68 0.841477
Target:  5'- aCCGGGGgucggggggugcgcaGGGCGGUGCCccGGGU-CGg -3'
miRNA:   3'- gGGCCUC---------------CCCGCCAUGGa-UCCAuGUg -5'
14449 3' -58.6 NC_003521.1 + 84507 0.67 0.84606
Target:  5'- gCUGGAGGGGCGaugcACCgcuauauGGUuGCACa -3'
miRNA:   3'- gGGCCUCCCCGCca--UGGau-----CCA-UGUG- -5'
14449 3' -58.6 NC_003521.1 + 148345 0.66 0.908991
Target:  5'- gCCCGGAGaGGcugggagacccccgaGCGGgcaaGCCgagcgGGGUGCGg -3'
miRNA:   3'- -GGGCCUC-CC---------------CGCCa---UGGa----UCCAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.