miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14449 5' -52.7 NC_003521.1 + 193319 0.66 0.997479
Target:  5'- gUGGGcACGGUGgggGUggucGCCUUCGUUCCc -3'
miRNA:   3'- gGCCUaUGCCAUa--UA----UGGGGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 232817 0.66 0.997479
Target:  5'- uCUGGAgcUACGGcgcugccccgGUAccuCCCCCGCcgCCg -3'
miRNA:   3'- -GGCCU--AUGCCa---------UAUau-GGGGGCGa-GG- -5'
14449 5' -52.7 NC_003521.1 + 56653 0.66 0.997479
Target:  5'- aCGGGc-CGGUGc--ACCuCCCGCUCg -3'
miRNA:   3'- gGCCUauGCCAUauaUGG-GGGCGAGg -5'
14449 5' -52.7 NC_003521.1 + 90149 0.66 0.997479
Target:  5'- cCCGGAUACuG-AUAcGCCCCC-UUCUu -3'
miRNA:   3'- -GGCCUAUGcCaUAUaUGGGGGcGAGG- -5'
14449 5' -52.7 NC_003521.1 + 91896 0.66 0.997479
Target:  5'- aCGGAcggACGG-----ACCCCCGgaUCCa -3'
miRNA:   3'- gGCCUa--UGCCauauaUGGGGGCg-AGG- -5'
14449 5' -52.7 NC_003521.1 + 163615 0.66 0.997479
Target:  5'- gCUGGAgaACGGcauc-ACCCaCCGCUUCg -3'
miRNA:   3'- -GGCCUa-UGCCauauaUGGG-GGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 148851 0.66 0.997479
Target:  5'- gCCGGAU-CGGccgccggGUuccGCCCUCGCcgCCa -3'
miRNA:   3'- -GGCCUAuGCCaua----UA---UGGGGGCGa-GG- -5'
14449 5' -52.7 NC_003521.1 + 119527 0.66 0.997479
Target:  5'- gCGGGUACGGguUGUGCCgCaGCaCCa -3'
miRNA:   3'- gGCCUAUGCCauAUAUGGgGgCGaGG- -5'
14449 5' -52.7 NC_003521.1 + 128101 0.66 0.997179
Target:  5'- gCCGGGUagACGGUcacgcucucuagggcGUugaccACCCCCagcaggaGCUCCu -3'
miRNA:   3'- -GGCCUA--UGCCA---------------UAua---UGGGGG-------CGAGG- -5'
14449 5' -52.7 NC_003521.1 + 239941 0.66 0.997042
Target:  5'- aCCGGAcgGCGGUuuaGUGUACCgaaGCgUCCc -3'
miRNA:   3'- -GGCCUa-UGCCA---UAUAUGGgggCG-AGG- -5'
14449 5' -52.7 NC_003521.1 + 81715 0.66 0.996543
Target:  5'- cCCaGGAgagcACGGaGUcg--CCCCGCUCCa -3'
miRNA:   3'- -GG-CCUa---UGCCaUAuaugGGGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 47250 0.66 0.996543
Target:  5'- aCCGGGUGaucugcgaGGUGgugGCCaaaCCGC-CCg -3'
miRNA:   3'- -GGCCUAUg-------CCAUauaUGGg--GGCGaGG- -5'
14449 5' -52.7 NC_003521.1 + 162591 0.66 0.996543
Target:  5'- gCCGGcUGCGGUG---GCaCUCGCUCg -3'
miRNA:   3'- -GGCCuAUGCCAUauaUGgGGGCGAGg -5'
14449 5' -52.7 NC_003521.1 + 185241 0.66 0.996543
Target:  5'- -aGGAgACGGUGUGgucGCUgugUCCGCUCa -3'
miRNA:   3'- ggCCUaUGCCAUAUa--UGG---GGGCGAGg -5'
14449 5' -52.7 NC_003521.1 + 216925 0.66 0.996326
Target:  5'- gCGGAgGCGGUcgaccccauacgcUGUugCCCCGgaCCc -3'
miRNA:   3'- gGCCUaUGCCAu------------AUAugGGGGCgaGG- -5'
14449 5' -52.7 NC_003521.1 + 234446 0.66 0.995978
Target:  5'- -aGaGAUugGGccg--ACCUCCGCUCUg -3'
miRNA:   3'- ggC-CUAugCCauauaUGGGGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 165886 0.66 0.995978
Target:  5'- cUCGGGcgGCGGguacaccACCCCgCGCUgCCg -3'
miRNA:   3'- -GGCCUa-UGCCauaua--UGGGG-GCGA-GG- -5'
14449 5' -52.7 NC_003521.1 + 233492 0.66 0.995978
Target:  5'- cCUGGAUcUGGUucccgagccUGUGCCuUCUGCUCCu -3'
miRNA:   3'- -GGCCUAuGCCAu--------AUAUGG-GGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 112831 0.66 0.995918
Target:  5'- cCCGGAUuccgugGCGGgcgucAUGgccgagcUGCCCCagcuGCUCCc -3'
miRNA:   3'- -GGCCUA------UGCCa----UAU-------AUGGGGg---CGAGG- -5'
14449 5' -52.7 NC_003521.1 + 68549 0.66 0.995539
Target:  5'- -aGGAgACccacacccaccagcUGUGCCCCCGCUCCu -3'
miRNA:   3'- ggCCUaUGccau----------AUAUGGGGGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.