miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14449 5' -52.7 NC_003521.1 + 125423 0.66 0.99534
Target:  5'- uCCGGAgGCcGUGgcgGCCgCCCGCgCCc -3'
miRNA:   3'- -GGCCUaUGcCAUauaUGG-GGGCGaGG- -5'
14449 5' -52.7 NC_003521.1 + 69139 0.66 0.99534
Target:  5'- gUGGGUggcaGCGGggcgGUGUACaUCUGCUCCc -3'
miRNA:   3'- gGCCUA----UGCCa---UAUAUGgGGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 172570 0.66 0.99534
Target:  5'- cCCGGGgucgGCGGUcgcaccGCCaggugaacguaCCGCUCCu -3'
miRNA:   3'- -GGCCUa---UGCCAuaua--UGGg----------GGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 92285 0.66 0.995271
Target:  5'- gCCGGAgcCGGUcgucagGUaaaacccucccccACCCCCGUcCCg -3'
miRNA:   3'- -GGCCUauGCCAua----UA-------------UGGGGGCGaGG- -5'
14449 5' -52.7 NC_003521.1 + 208945 0.66 0.994621
Target:  5'- gCGGccugGCGGUGcgGUACCgCUCGCaCCg -3'
miRNA:   3'- gGCCua--UGCCAUa-UAUGG-GGGCGaGG- -5'
14449 5' -52.7 NC_003521.1 + 149011 0.66 0.994621
Target:  5'- cCCGGAUggggggugcAgGGUGgggGUGCCCaaCCGCcgCCc -3'
miRNA:   3'- -GGCCUA---------UgCCAUa--UAUGGG--GGCGa-GG- -5'
14449 5' -52.7 NC_003521.1 + 123210 0.66 0.994621
Target:  5'- aCCGGGUcGCuGGg----ACCCUCGCUgCg -3'
miRNA:   3'- -GGCCUA-UG-CCauauaUGGGGGCGAgG- -5'
14449 5' -52.7 NC_003521.1 + 174530 0.66 0.994621
Target:  5'- uCCGGGU-CGGc-UGUGCCCgccaguCCGcCUCCc -3'
miRNA:   3'- -GGCCUAuGCCauAUAUGGG------GGC-GAGG- -5'
14449 5' -52.7 NC_003521.1 + 121687 0.66 0.994621
Target:  5'- gCCGuGAUgcGCGGUGagGUAUCCgaGUUCCg -3'
miRNA:   3'- -GGC-CUA--UGCCAUa-UAUGGGggCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 140090 0.66 0.994621
Target:  5'- cCCGGAcgACGacAUGaacCCCCCGcCUCCu -3'
miRNA:   3'- -GGCCUa-UGCcaUAUau-GGGGGC-GAGG- -5'
14449 5' -52.7 NC_003521.1 + 45244 0.67 0.993815
Target:  5'- cCCGGcagACGGgccugACCCCCaagcGCUUCc -3'
miRNA:   3'- -GGCCua-UGCCauauaUGGGGG----CGAGG- -5'
14449 5' -52.7 NC_003521.1 + 150142 0.67 0.993815
Target:  5'- aCCGGAgcgGgGGUAUAUACCgUa--UCCg -3'
miRNA:   3'- -GGCCUa--UgCCAUAUAUGGgGgcgAGG- -5'
14449 5' -52.7 NC_003521.1 + 103550 0.67 0.993815
Target:  5'- uCCaGGUcGCuGGg----GCCCCCGCUCUg -3'
miRNA:   3'- -GGcCUA-UG-CCauauaUGGGGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 148175 0.67 0.993815
Target:  5'- aCCGGGgggAUGGg----ACCCUCgGUUCCg -3'
miRNA:   3'- -GGCCUa--UGCCauauaUGGGGG-CGAGG- -5'
14449 5' -52.7 NC_003521.1 + 169525 0.67 0.993729
Target:  5'- cCCaGGUGCuGGUgccccaggggcccGUGccgcgGCCCCCGcCUCCg -3'
miRNA:   3'- -GGcCUAUG-CCA-------------UAUa----UGGGGGC-GAGG- -5'
14449 5' -52.7 NC_003521.1 + 134333 0.67 0.992914
Target:  5'- -aGGAUaACGGggac--CCCCCGCcgCCg -3'
miRNA:   3'- ggCCUA-UGCCauauauGGGGGCGa-GG- -5'
14449 5' -52.7 NC_003521.1 + 23946 0.67 0.992914
Target:  5'- cCUGGAUGCcuGG-AUG---UCCCGCUCCa -3'
miRNA:   3'- -GGCCUAUG--CCaUAUaugGGGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 224532 0.67 0.992914
Target:  5'- gCCGGGc-CGGUAggcACCCCgGCgCCc -3'
miRNA:   3'- -GGCCUauGCCAUauaUGGGGgCGaGG- -5'
14449 5' -52.7 NC_003521.1 + 14451 0.67 0.992914
Target:  5'- cCCuGcgGCGGcGUcaGCCgCCGCUCCc -3'
miRNA:   3'- -GGcCuaUGCCaUAuaUGGgGGCGAGG- -5'
14449 5' -52.7 NC_003521.1 + 72983 0.67 0.991912
Target:  5'- gCGGccGCGGggg--GCCUggCCGCUCCu -3'
miRNA:   3'- gGCCuaUGCCauauaUGGG--GGCGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.