miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1445 5' -60.8 NC_001335.1 + 44430 0.66 0.433843
Target:  5'- cGGCCAuaccuucguAGGgCUCGAUGGauGGGUCGa -3'
miRNA:   3'- cCCGGU---------UCCgGGGCUGCCguUCCAGU- -5'
1445 5' -60.8 NC_001335.1 + 11339 0.66 0.424572
Target:  5'- cGGCCuugauGGCCUCGA-GGaucGGGUCAc -3'
miRNA:   3'- cCCGGuu---CCGGGGCUgCCgu-UCCAGU- -5'
1445 5' -60.8 NC_001335.1 + 32897 0.66 0.424572
Target:  5'- gGGGCC--GGCUCgGGCugGGCAGGGgCGg -3'
miRNA:   3'- -CCCGGuuCCGGGgCUG--CCGUUCCaGU- -5'
1445 5' -60.8 NC_001335.1 + 2548 0.66 0.424572
Target:  5'- -cGCCGAGGgcguagCCCGACGGCGGGa--- -3'
miRNA:   3'- ccCGGUUCCg-----GGGCUGCCGUUCcagu -5'
1445 5' -60.8 NC_001335.1 + 22674 0.66 0.424572
Target:  5'- cGGCCGAGGgUacuaccgugCCGACGGCcaccaacuGGUCu -3'
miRNA:   3'- cCCGGUUCCgG---------GGCUGCCGuu------CCAGu -5'
1445 5' -60.8 NC_001335.1 + 27156 0.66 0.424572
Target:  5'- aGGCgGacAGGCUCaggguGGCGGCAAGGcCGa -3'
miRNA:   3'- cCCGgU--UCCGGGg----CUGCCGUUCCaGU- -5'
1445 5' -60.8 NC_001335.1 + 25999 0.66 0.424572
Target:  5'- aGGGCCAcuguGGCgaCCGugGcGaCGAGcGUCAg -3'
miRNA:   3'- -CCCGGUu---CCGg-GGCugC-C-GUUC-CAGU- -5'
1445 5' -60.8 NC_001335.1 + 35923 0.66 0.424572
Target:  5'- cGGCCAAGGCCCgCGACuuGUuccAGGa-- -3'
miRNA:   3'- cCCGGUUCCGGG-GCUGc-CGu--UCCagu -5'
1445 5' -60.8 NC_001335.1 + 21956 0.66 0.415421
Target:  5'- -cGCCGAuGGCCUCuaguggguugGugGGguAGGUCAc -3'
miRNA:   3'- ccCGGUU-CCGGGG----------CugCCguUCCAGU- -5'
1445 5' -60.8 NC_001335.1 + 17775 0.66 0.406392
Target:  5'- cGGGCCAAGGaUCUCG-CGGCuGAGcuGUCc -3'
miRNA:   3'- -CCCGGUUCC-GGGGCuGCCG-UUC--CAGu -5'
1445 5' -60.8 NC_001335.1 + 30747 0.66 0.397488
Target:  5'- aGGG--GAGGCauugCCUGACGGCAAGGcCc -3'
miRNA:   3'- -CCCggUUCCG----GGGCUGCCGUUCCaGu -5'
1445 5' -60.8 NC_001335.1 + 16544 0.66 0.388709
Target:  5'- cGGGCCucGGCCCUGugcucgcuacCGGCAcgcAGG-CGu -3'
miRNA:   3'- -CCCGGuuCCGGGGCu---------GCCGU---UCCaGU- -5'
1445 5' -60.8 NC_001335.1 + 13283 0.67 0.380059
Target:  5'- uGGCCGGGauGCCgguauUCGACGGCcuGGUCc -3'
miRNA:   3'- cCCGGUUC--CGG-----GGCUGCCGuuCCAGu -5'
1445 5' -60.8 NC_001335.1 + 49807 0.67 0.380059
Target:  5'- aGGCCGAGuuUCCGACGGC--GGUg- -3'
miRNA:   3'- cCCGGUUCcgGGGCUGCCGuuCCAgu -5'
1445 5' -60.8 NC_001335.1 + 32751 0.67 0.380059
Target:  5'- --uUCAAGGCgCUGAUGGaCAAGGUCc -3'
miRNA:   3'- cccGGUUCCGgGGCUGCC-GUUCCAGu -5'
1445 5' -60.8 NC_001335.1 + 10821 0.67 0.369008
Target:  5'- aGGCCGAGaCCCCGgaggucgagaaGCcgauggaaccgcagGGCAAGGUCu -3'
miRNA:   3'- cCCGGUUCcGGGGC-----------UG--------------CCGUUCCAGu -5'
1445 5' -60.8 NC_001335.1 + 7769 0.67 0.362317
Target:  5'- uGGCCAAGuaCCUGgauaagcACGGCAGGGa-- -3'
miRNA:   3'- cCCGGUUCcgGGGC-------UGCCGUUCCagu -5'
1445 5' -60.8 NC_001335.1 + 4860 0.67 0.346768
Target:  5'- -aGCCGgugaugcucgucGGGCUCCagcacggaGGCGGCGGGGUCu -3'
miRNA:   3'- ccCGGU------------UCCGGGG--------CUGCCGUUCCAGu -5'
1445 5' -60.8 NC_001335.1 + 38073 0.67 0.346768
Target:  5'- -cGCCGagcuguguGGGCUgCCGACGGUggGGcUCAg -3'
miRNA:   3'- ccCGGU--------UCCGG-GGCUGCCGuuCC-AGU- -5'
1445 5' -60.8 NC_001335.1 + 44320 0.68 0.329367
Target:  5'- uGGCCAcgaccagAGGaguucacCCUCGGCGGUGAGGUUg -3'
miRNA:   3'- cCCGGU-------UCC-------GGGGCUGCCGUUCCAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.