miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 3' -60.1 NC_003521.1 + 212837 0.66 0.879948
Target:  5'- gCCGCUcaCGCuGCCgCCGuGGCCGUgaGCg -3'
miRNA:   3'- -GGUGG--GCGcUGGaGGC-CUGGCAgaCG- -5'
14452 3' -60.1 NC_003521.1 + 211580 0.66 0.879948
Target:  5'- aCGCUCGCGGCgguguccCCGGAgaCGUcCUGCa -3'
miRNA:   3'- gGUGGGCGCUGga-----GGCCUg-GCA-GACG- -5'
14452 3' -60.1 NC_003521.1 + 223042 0.66 0.879948
Target:  5'- gCACgCCGaCGGCCUCCaGGucAUCGUCacaGCa -3'
miRNA:   3'- gGUG-GGC-GCUGGAGG-CC--UGGCAGa--CG- -5'
14452 3' -60.1 NC_003521.1 + 120280 0.66 0.879948
Target:  5'- uCC-CCCGgGACCgCCGG-CCGcCgaggGCc -3'
miRNA:   3'- -GGuGGGCgCUGGaGGCCuGGCaGa---CG- -5'
14452 3' -60.1 NC_003521.1 + 118184 0.66 0.879948
Target:  5'- aCGCCCGcCGGCaaagUCgGGGCCGcCgaGCg -3'
miRNA:   3'- gGUGGGC-GCUGg---AGgCCUGGCaGa-CG- -5'
14452 3' -60.1 NC_003521.1 + 69407 0.66 0.879292
Target:  5'- aUCGCaCCGUGAgCCUCCugcugguGGACCGggaGCa -3'
miRNA:   3'- -GGUG-GGCGCU-GGAGG-------CCUGGCagaCG- -5'
14452 3' -60.1 NC_003521.1 + 129707 0.66 0.879292
Target:  5'- aCGCCCGCuucugccGGCCg-CGGcCCGUCgacGCg -3'
miRNA:   3'- gGUGGGCG-------CUGGagGCCuGGCAGa--CG- -5'
14452 3' -60.1 NC_003521.1 + 56835 0.66 0.877974
Target:  5'- cCCACCaCGCGGCCUaucaggCGGacuacggggccuacGCCGUaCUGa -3'
miRNA:   3'- -GGUGG-GCGCUGGAg-----GCC--------------UGGCA-GACg -5'
14452 3' -60.1 NC_003521.1 + 42951 0.66 0.877974
Target:  5'- gCCGCCugcagcccagcgagCGCGACCcgCCGGcgcccACCGacgacCUGCa -3'
miRNA:   3'- -GGUGG--------------GCGCUGGa-GGCC-----UGGCa----GACG- -5'
14452 3' -60.1 NC_003521.1 + 149390 0.66 0.873302
Target:  5'- aCC-CCCGUGGgCUUCGuGGCCGUg-GCc -3'
miRNA:   3'- -GGuGGGCGCUgGAGGC-CUGGCAgaCG- -5'
14452 3' -60.1 NC_003521.1 + 233713 0.66 0.873302
Target:  5'- uCCACCUcaGCGGCCUggagaaggaGGACgccgccgccgCGUCUGCu -3'
miRNA:   3'- -GGUGGG--CGCUGGAgg-------CCUG----------GCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 202546 0.66 0.873302
Target:  5'- aCCugCUGCGcgccgGCCUCCugGGGCUG-CUGa -3'
miRNA:   3'- -GGugGGCGC-----UGGAGG--CCUGGCaGACg -5'
14452 3' -60.1 NC_003521.1 + 152282 0.66 0.873302
Target:  5'- cCCugcCCCGaggaGGCCguUUCGGugCGcCUGCa -3'
miRNA:   3'- -GGu--GGGCg---CUGG--AGGCCugGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 2318 0.66 0.873302
Target:  5'- aCCugCUGCGcgccgGCCUCCugGGGCUG-CUGa -3'
miRNA:   3'- -GGugGGCGC-----UGGAGG--CCUGGCaGACg -5'
14452 3' -60.1 NC_003521.1 + 122639 0.66 0.873302
Target:  5'- gCgGCCC-CGACUUUgccggCGGGCguCGUCUGCg -3'
miRNA:   3'- -GgUGGGcGCUGGAG-----GCCUG--GCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 114045 0.66 0.873302
Target:  5'- aCCACgCGCagcgccagGGCCUgCCGGACuucaCGUCgcUGCa -3'
miRNA:   3'- -GGUGgGCG--------CUGGA-GGCCUG----GCAG--ACG- -5'
14452 3' -60.1 NC_003521.1 + 76750 0.66 0.873302
Target:  5'- gCAUgaCGaCGACCUCCGaggcGACCGUC-GCc -3'
miRNA:   3'- gGUGg-GC-GCUGGAGGC----CUGGCAGaCG- -5'
14452 3' -60.1 NC_003521.1 + 26659 0.66 0.873302
Target:  5'- aCUGCCCGuCGACCaagccaUCCGcGGCUccCUGCu -3'
miRNA:   3'- -GGUGGGC-GCUGG------AGGC-CUGGcaGACG- -5'
14452 3' -60.1 NC_003521.1 + 109073 0.66 0.873302
Target:  5'- aCCGCCUG-GuCCUCCaGGCCGU--GCa -3'
miRNA:   3'- -GGUGGGCgCuGGAGGcCUGGCAgaCG- -5'
14452 3' -60.1 NC_003521.1 + 234455 0.66 0.873302
Target:  5'- cCCcUCCGCGACCccgaCCGGcCCcUCUGg -3'
miRNA:   3'- -GGuGGGCGCUGGa---GGCCuGGcAGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.